FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_THEEB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermosynechococcus elongatus (strain BP-1) GN=hemL PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 7.203e-71
Identity = 125/164 (76.22%), Postives = 145/164 (88.41%), Query Frame = 2
Query:  206 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            F    S+E F  A++LMPGGV+SPVRAFKSVGGQPIVFD VKG+H+WD+DGN+YIDYVGSWGPAI+GHA  +V+ AL   ++KGTSFGAPCLLEN+LAEMVI+AVPS+EMVRFVNSGTEACM VLRL RA+T RE++ +FEGCYHGHAD FLVKAGSGVATLGL
Sbjct:   11 FQTTKSQEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDALHAALEKGTSFGAPCLLENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYTQREKVIKFEGCYHGHADMFLVKAGSGVATLGL 174          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PROMT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain NATL2A) GN=hemL PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.605e-70
Identity = 127/161 (78.88%), Postives = 140/161 (86.96%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            K SEE F  AK LMPGGV+SPVRAFKSV G PIVFD VKG + WD+DGN YIDYVGSWGPAI GHA  +V+AAL ET++KGTSFGAPC+LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++ +FEGCYHGHAD FLVKAGSGVATLGL
Sbjct:    8 KRSEEIFGAAKNLMPGGVSSPVRAFKSVEGDPIVFDRVKGPYAWDVDGNRYIDYVGSWGPAICGHAHPEVIAALQETLEKGTSFGAPCVLENQLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFEGCYHGHADMFLVKAGSGVATLGL 168          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PROM1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain NATL1A) GN=hemL PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.605e-70
Identity = 127/161 (78.88%), Postives = 140/161 (86.96%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            K SEE F  AK LMPGGV+SPVRAFKSV G PIVFD VKG + WD+DGN YIDYVGSWGPAI GHA  +V+AAL ET++KGTSFGAPC+LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++ +FEGCYHGHAD FLVKAGSGVATLGL
Sbjct:    4 KRSEEIFGAAKNLMPGGVSSPVRAFKSVEGDPIVFDRVKGPYAWDVDGNRYIDYVGSWGPAICGHAHPEVIAALQETLEKGTSFGAPCVLENQLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFEGCYHGHADMFLVKAGSGVATLGL 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NOSP7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hemL PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.737e-70
Identity = 129/167 (77.25%), Postives = 146/167 (87.43%), Query Frame = 2
Query:  203 NFTLKN--SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            N T+K   S+E F  A+ LMPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDYVG+WGPAI GHA  +V+AAL E ++KGTSFGAP  LENVLAEMVI AVPSIEMVRFVNSGTEACMGVLRL RAFT R++I +FEGCYHGHAD FLVKAGSGVATLGL
Sbjct:    3 NTTIKTTKSQEVFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDRVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPEVIAALHEALEKGTSFGAPSTLENVLAEMVIDAVPSIEMVRFVNSGTEACMGVLRLMRAFTNRDKIIKFEGCYHGHADTFLVKAGSGVATLGL 169          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CYAP8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain PCC 8801) GN=hemL PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.575e-70
Identity = 127/165 (76.97%), Postives = 144/165 (87.27%), Query Frame = 2
Query:  203 NFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +F    SEE F  A++LMPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDYVG+WGPAI GHA   V+AAL E ++KGTSFGAP + EN+LAEMVI AVPSIEMVRFVNSGTEACM VLRL RAFTGRE+I +FEGCYHGHAD FLVKAGSGVATLGL
Sbjct:    6 SFQTTKSEEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPDVIAALHEALEKGTSFGAPSVQENILAEMVIEAVPSIEMVRFVNSGTEACMSVLRLMRAFTGREKIIKFEGCYHGHADMFLVKAGSGVATLGL 170          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CYAP4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=hemL PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.575e-70
Identity = 126/164 (76.83%), Postives = 141/164 (85.98%), Query Frame = 2
Query:  206 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            F    SEE F  A++LMPGGVNSPVRAFKSVGG PIVFD V+G+++WD+DGN+YIDYVGSWGPAI GHA  +V+ AL   + KGTSFGAPCLLENVLAEMVI  VPSIEMVRFVNSGTEACM +LRL RA+TGRE+I +FEGCYHGHAD FLVKAGSGVATLGL
Sbjct:    6 FNTTKSEEIFAAAQKLMPGGVNSPVRAFKSVGGNPIVFDRVEGAYVWDVDGNQYIDYVGSWGPAICGHAHPEVIKALHAALDKGTSFGAPCLLENVLAEMVIDGVPSIEMVRFVNSGTEACMAILRLMRAYTGREKIIKFEGCYHGHADMFLVKAGSGVATLGL 169          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SYNS3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9311) GN=hemL PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.669e-70
Identity = 124/165 (75.15%), Postives = 142/165 (86.06%), Query Frame = 2
Query:  203 NFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            N    +SE  F+ AK LMPGGV+SPVRAFKSVGGQPIVFD VKG + WD+DGN+Y+DY+GSWGPAI GHA  +V++AL E ++KGTSFGAPC LEN LAEMVI AVPS+EMVRFVNSGTEACM +LRL RAFTGR++I +FEGCYHGHAD FLVKAGSGVATLGL
Sbjct:   10 NLNTSHSEAIFSAAKALMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYVDYIGSWGPAICGHAHPEVISALQEAIEKGTSFGAPCALENTLAEMVIEAVPSVEMVRFVNSGTEACMSMLRLIRAFTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGL 174          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PROM0 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9301) GN=hemL PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.098e-70
Identity = 127/165 (76.97%), Postives = 143/165 (86.67%), Query Frame = 2
Query:  203 NFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            N+T   SEE F+ A+ELMPGGV+SPVRAFKSVGGQPIVFD VKG   WDIDGN YIDY+GSWGPAI GHA  +V+ AL E ++KGTSFGAPC+LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++ +F+GCYHGHAD FLVKAGSGVATLGL
Sbjct:    6 NYT--KSEEIFSAAQELMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSWGPAICGHAHPEVITALHEAIEKGTSFGAPCVLENKLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFDGCYHGHADMFLVKAGSGVATLGL 168          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CYAA5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain ATCC 51142) GN=hemL PE=3 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 7.964e-70
Identity = 124/159 (77.99%), Postives = 144/159 (90.57%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE+ F  A++LMPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDYVG+WGPAI GHA  +V+AAL + + +GTSFGAPCLLENVLAEMVI AVPSIEMVRFVNSGTEACM VLRL RAFTGR++I +F+GCYHGHAD FLV+AGSGVATLGL
Sbjct:   12 SEDIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPEVIAALHDALDRGTSFGAPCLLENVLAEMVIDAVPSIEMVRFVNSGTEACMSVLRLMRAFTGRDKIIKFQGCYHGHADMFLVQAGSGVATLGL 170          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PROMP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=hemL PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.040e-69
Identity = 125/159 (78.62%), Postives = 140/159 (88.05%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEE F+ A ELMPGGV+SPVRAFKSVGGQPIVFD VKG + WDIDGN YIDY+GSWGPAI GHA  +V+ AL E ++KGTSFGAPC+LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++ +F+GCYHGHAD FLVKAGSGVATLGL
Sbjct:   10 SEEVFSSALELMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDIDGNRYIDYIGSWGPAICGHAHPEVITALQEAIEKGTSFGAPCVLENKLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFDGCYHGHADMFLVKAGSGVATLGL 168          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_THEEB7.203e-7176.22Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]
GSA_PROMT1.605e-7078.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_PROM11.605e-7078.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_NOSP72.737e-7077.25Glutamate-1-semialdehyde 2,1-aminomutase OS=Nostoc... [more]
GSA_CYAP83.575e-7076.97Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_CYAP43.575e-7076.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_SYNS34.669e-7075.15Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROM06.098e-7076.97Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_CYAA57.964e-7077.99Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_PROMP1.040e-6978.62Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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