FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAAR (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain MRSA252) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAAN (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain N315) GN=hemL1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAAM (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=hemL1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAAE (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain Newman) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAAC (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain COL) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAAB (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAA9 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain JH9) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAA8 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAA3 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain USA300) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAA2 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain JH1) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_STAAR2.487e-5567.92Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAN2.487e-5567.92Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAM2.487e-5567.92Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAE2.487e-5567.92Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAC2.487e-5567.92Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAB2.487e-5567.92Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA92.487e-5567.92Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA82.487e-5567.92Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA32.487e-5567.92Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA22.487e-5567.92Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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