FC876181

Overview
NameFC876181
Unique NameFC876181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.704e-46
Identity = 99/184 (53.80%), Postives = 115/184 (62.50%), Query Frame = 3
Query:  183 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L ELN RPLEVFMCS++++ GY
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.704e-46
Identity = 99/184 (53.80%), Postives = 115/184 (62.50%), Query Frame = 3
Query:  183 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L ELN RPLEVFMCS++++ GY
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSVLKRQGY 186          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.225e-46
Identity = 98/184 (53.26%), Postives = 115/184 (62.50%), Query Frame = 3
Query:  183 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG ++L ELN RPLEVFMCS++++ GY
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGY 186          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.225e-46
Identity = 99/184 (53.80%), Postives = 115/184 (62.50%), Query Frame = 3
Query:  183 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L ELN RPLEVFMCS++++ GY
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.957e-46
Identity = 99/181 (54.70%), Postives = 117/181 (64.64%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            M+L DWF  VL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID+P A  E EL+  LGL N TTGK    L E   RP+EV+M S+V + GY
Sbjct:    1 MWLFDWFQDVLSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYN-TTGKDTGKLPE-GSRPIEVYMVSVVMRSGY 179          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.957e-46
Identity = 99/181 (54.70%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            M++++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+    PT +PTSEEL IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFLVLGNKID P A SE+ELR+ LGL   TTGKG+V L    +RP+EVFMCS+V + GY
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELVIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPLE--GIRPIEVFMCSVVMRQGY 178          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.957e-46
Identity = 101/181 (55.80%), Postives = 116/181 (64.09%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            M+L DWF  VLASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID   A  E EL+  LGL N TTGK    L E   RP+EVFM S+V +MGY
Sbjct:    1 MWLFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYN-TTGKDTGKLPE-GQRPIEVFMVSVVMRMGY 179          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46
Identity = 98/181 (54.14%), Postives = 116/181 (64.09%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            M++ DWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L E   RP+EVFM S+V + GY
Sbjct:    1 MWIFDWFQDILASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPE-GQRPIEVFMVSVVMRSGY 179          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.455e-46
Identity = 97/181 (53.59%), Postives = 116/181 (64.09%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            M++ DWF  +L+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L E   RP+EVFM S+V + GY
Sbjct:    1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPE-GTRPIEVFMVSVVMRSGY 179          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.460e-45
Identity = 101/181 (55.80%), Postives = 115/181 (63.54%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            M++L+WF  VLASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEELSIG ++F  FDLGGH+ ARRVW                   ERF ES+              VP LVLGNKID   A SE ELR+ LGL   TTGK +V L E   RPLEVF CSI  + GY
Sbjct:    1 MWVLNWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGLMT-TTGKDKVQLVE-GQRPLEVFTCSIYLRQGY 179          
The following BLAST results are available for this feature:
BLAST of FC876181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1B_PIG1.704e-4653.80GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_BOVIN1.704e-4653.80GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
SAR1B_HUMAN2.225e-4653.26GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR2.225e-4653.80GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1_PICST4.957e-4654.70Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
SAR1_EMENI4.957e-4654.70Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1_DEBHA4.957e-4655.80Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1_LODEL6.474e-4654.14Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_CANAL8.455e-4653.59Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
SAR1_PICPG2.460e-4555.80Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]

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Properties
Property NameValue
Genbank descriptionC32001C09EF DevOvary1 Citrus clementina cDNA clone C32001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876181 ID=FC876181; Name=FC876181; organism=Citrus clementina; type=EST; length=722bp
CTCGCCGGGGAAGCAGTCCCTGGTTGATTACGTTCGCCCACTGAACTTGC
TCATCTTAGGGTCAGTATCAAATCGAAACAGAGGCCTTGAATTGGACGAT
CTGATTCGTTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATCCGTTT
TCGTTTCTAATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACTGGTTC
TACGGCGTGCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTT
GTTTTTAGGGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGTTGA
AAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCACATCGGAA
GAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGGCCA
TCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATGCTG
TGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAG
AAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCCTTT
TCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGAGGAAG
AGTTGCGTTACCACCTTGGCCTATNCAATTTCACCACTGGGAAAGGGGAG
GTTAATCTAGCGGAACTCAATGTCCGTCCACTGGAGGTGTTTATGTGTAG
CATAGTTCGCAAAATGGGATAT
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