FC876181

Overview
NameFC876181
Unique NameFC876181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.213e-45
Identity = 97/181 (53.59%), Postives = 119/181 (65.75%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            M+L++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   E F ESK              VPFL+LGNKID P A SE+++R+ LGL   TTGKG+V L    +RP+EVFMCS+V + GY
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLYQ-TTGKGKVPLE--GIRPIEVFMCSVVMRQGY 178          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.196e-45
Identity = 99/181 (54.70%), Postives = 119/181 (65.75%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            MFL DWF+ VL+ LGL+ K AKILFLGLDNAGKTTLL +LKD RL  + PT +PTSEEL++G I+FKAFDLGGH+ ARR+W                   +RF ESKK            NVPFL+LGNK+DI    SEE+ R  LGL   TTGKG+  L    VRP+EVFMCS+V++ GY
Sbjct:    1 MFLFDWFWNVLSFLGLYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIG-NTSEEKFRASLGLTQ-TTGKGKTTLN--GVRPIEVFMCSVVKRYGY 177          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.481e-45
Identity = 97/181 (53.59%), Postives = 117/181 (64.64%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            MF+++WFY  LA LGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ER +ESK              VPFL+LGNKID P A SE+EL+  LGL   TTGKG V+     +RP+EVFMCS+V + GY
Sbjct:    1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLYQ-TTGKG-VSKPVPGIRPIEVFMCSVVLRQGY 179          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 7.158e-45
Identity = 99/181 (54.70%), Postives = 114/181 (62.98%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            M++ DWF  VLASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ER AESK              VPFL+LGNKID   A  E EL+  LGL N TTGK    L E   RP+EVFM S+V +MGY
Sbjct:    1 MWIFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTAIGEMELKSALGLYN-TTGKDVTKLPE-GQRPIEVFMVSVVMRMGY 179          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.158e-45
Identity = 96/181 (53.04%), Postives = 115/181 (63.54%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            M+L  WFY +L++LGL  K  K+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEELS+G +KF  FDLGGHQ ARR+W                   ER  E+K              VPF+VLGNKID P A SE+ELR  LGL   TTGKG V L    +RP+EVFMCS+V + GY
Sbjct:    1 MWLWSWFYDILSNLGLLNKHGKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLWQ-TTGKGRVPLE--GIRPIEVFMCSVVMRQGY 178          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.083e-44
Identity = 89/180 (49.44%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  183 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            FL DWF GVL  LGL  K+ K++FLGLDNAGKTTLLHMLKD+R+ QH PT +PTSE++S+G I F  +DLGGH  ARRVW                   ER  ES+             +VP L+LGNKID P A SE++L++ L + +  TGKG+V+  E+  RP+EVFMCS++++ GY
Sbjct:    3 FLWDWFNGVLNMLGLANKKGKLVFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQRQGY 182          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.083e-44
Identity = 95/184 (51.63%), Postives = 113/184 (61.41%), Query Frame = 3
Query:  183 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L ELN RP+EVFMCS++++ GY
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGY 186          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.083e-44
Identity = 95/184 (51.63%), Postives = 113/184 (61.41%), Query Frame = 3
Query:  183 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L ELN RP+EVFMCS++++ GY
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGY 186          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 95/184 (51.63%), Postives = 113/184 (61.41%), Query Frame = 3
Query:  183 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L ELN RP+EVFMCS++++ GY
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGY 186          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 95/184 (51.63%), Postives = 113/184 (61.41%), Query Frame = 3
Query:  183 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L ELN RP+EVFMCS++++ GY
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGY 186          
The following BLAST results are available for this feature:
BLAST of FC876181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1_ASPNG3.213e-4553.59Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1A_DICDI4.196e-4554.70GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1_SCHPO5.481e-4553.59Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]
SAR1_PICGU7.158e-4554.70Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_NEUCR7.158e-4553.04Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_CAEEL2.083e-4449.44GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1A_PONAB2.083e-4451.63GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN2.083e-4451.63GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1A_PIG3.552e-4451.63GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]
SAR1A_BOVIN3.552e-4451.63GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]

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Properties
Property NameValue
Genbank descriptionC32001C09EF DevOvary1 Citrus clementina cDNA clone C32001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876181 ID=FC876181; Name=FC876181; organism=Citrus clementina; type=EST; length=722bp
CTCGCCGGGGAAGCAGTCCCTGGTTGATTACGTTCGCCCACTGAACTTGC
TCATCTTAGGGTCAGTATCAAATCGAAACAGAGGCCTTGAATTGGACGAT
CTGATTCGTTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATCCGTTT
TCGTTTCTAATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACTGGTTC
TACGGCGTGCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTT
GTTTTTAGGGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGTTGA
AAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCACATCGGAA
GAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGGCCA
TCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATGCTG
TGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAG
AAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCCTTT
TCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGAGGAAG
AGTTGCGTTACCACCTTGGCCTATNCAATTTCACCACTGGGAAAGGGGAG
GTTAATCTAGCGGAACTCAATGTCCGTCCACTGGAGGTGTTTATGTGTAG
CATAGTTCGCAAAATGGGATAT
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