FC876182

Overview
NameFC876182
Unique NameFC876182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_MOUSE (Cytosolic Fe-S cluster assembly factor NUBP1 OS=Mus musculus GN=Nubp1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.224e-15
Identity = 35/63 (55.56%), Postives = 40/63 (63.49%), Query Frame = 3
Query:  486 ENANEHCPGPQSESAGESDDCQGCPNQEACAT-APKGPDPDLVAIAERMATVKHKILVLSGKG 671
            E A   CPG  S  AG    CQGCPNQ  CA+ A   PDP +  I E+M TV+HK+LVLSGKG
Sbjct:    2 EEAPHGCPGADSAQAGRGASCQGCPNQRLCASGAGAAPDPAVEEIREKMKTVRHKLLVLSGKG 64          

HSP 2 Score: 30.4166 bits (67), Expect = 3.224e-15
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKSTFSA L++ LA
Sbjct:   63 KGGVGKSTFSAHLAHGLA 80          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_CAEBR (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Caenorhabditis briggsae GN=CBG03788 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.227e-15
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  477 EIPENANEHCPGPQSESAGESDDCQGCPNQEACATAP-KGPDPDLVAIAERMATVKHKILVLSGKG 671
            ++PE+AN  CPG  S  AG++  C GCPNQ ACAT     PD D+  I +R + +KHKIL+LSGKG
Sbjct:    3 DVPEDANAGCPGTGSAGAGKASGCAGCPNQGACATGQGPPPDADVPKIQDRFSRIKHKILILSGKG 68          

HSP 2 Score: 26.1794 bits (56), Expect = 3.227e-15
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKST ++ L+ ALA+
Sbjct:   67 KGGVGKSTLTSNLARALAS 85          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_BOVIN (Cytosolic Fe-S cluster assembly factor NUBP1 OS=Bos taurus GN=NUBP1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-14
Identity = 35/63 (55.56%), Postives = 38/63 (60.32%), Query Frame = 3
Query:  486 ENANEHCPGPQSESAGESDDCQGCPNQEACAT-APKGPDPDLVAIAERMATVKHKILVLSGKG 671
            E     CPG  S  AG    CQGCPNQ  CA+ A    DP +  I E+M TVKHKILVLSGKG
Sbjct:    2 EEVPHDCPGADSAQAGRGASCQGCPNQRLCASGAGAAADPAIEEIKEKMKTVKHKILVLSGKG 64          

HSP 2 Score: 30.4166 bits (67), Expect = 1.195e-14
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKSTFSA L++ LA
Sbjct:   63 KGGVGKSTFSAHLAHGLA 80          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_CAEEL (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Caenorhabditis elegans GN=F10G8.6 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.554e-14
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  477 EIPENANEHCPGPQSESAGESDDCQGCPNQEACATAP-KGPDPDLVAIAERMATVKHKILVLSGKG 671
            ++P++AN  CPG  S  AG++  C GCPNQ +CAT     PD D+  I +R + +KHKIL+LSGKG
Sbjct:    3 DVPDDANAGCPGTGSAGAGKASGCAGCPNQGSCATGQGPPPDADVPKIQDRFSRIKHKILILSGKG 68          

HSP 2 Score: 26.1794 bits (56), Expect = 1.554e-14
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKST ++ L+ ALA+
Sbjct:   67 KGGVGKSTLTSNLARALAS 85          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_HUMAN (Cytosolic Fe-S cluster assembly factor NUBP1 OS=Homo sapiens GN=NUBP1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.017e-14
Identity = 35/63 (55.56%), Postives = 38/63 (60.32%), Query Frame = 3
Query:  486 ENANEHCPGPQSESAGESDDCQGCPNQEACAT-APKGPDPDLVAIAERMATVKHKILVLSGKG 671
            E     CPG  S  AG    CQGCPNQ  CA+ A   PD  +  I E+M TVKHKILVLSGKG
Sbjct:    2 EEVPHDCPGADSAQAGRGASCQGCPNQRLCASGAGATPDTAIEEIKEKMKTVKHKILVLSGKG 64          

HSP 2 Score: 30.4166 bits (67), Expect = 2.017e-14
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKSTFSA L++ LA
Sbjct:   63 KGGVGKSTFSAHLAHGLA 80          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_DROSI (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Drosophila simulans GN=GD24076 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.073e-11
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKG-PDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPG +SE+AG+   C GCPNQ  C+   K   DP    + E M  VKHK+L+LSGKG
Sbjct:    7 EHCPGVESENAGKGSACSGCPNQGVCSDPNKKLEDPGKALVVESMKDVKHKLLILSGKG 65          

HSP 2 Score: 22.3274 bits (46), Expect = 1.073e-11
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKST ++ L+  LA
Sbjct:   64 KGGVGKSTVTSLLTRYLA 81          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_DROSE (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Drosophila sechellia GN=GM17199 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.393e-11
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKG-PDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPG +SE AG+   C GCPNQ  C+   K   DP    + E M  VKHK+L+LSGKG
Sbjct:    7 EHCPGVESEDAGKGSACSGCPNQGVCSDPNKKLEDPGKALVVESMKDVKHKLLILSGKG 65          

HSP 2 Score: 22.3274 bits (46), Expect = 1.393e-11
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKST ++ L+  LA
Sbjct:   64 KGGVGKSTVTSLLARYLA 81          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_DROME (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Drosophila melanogaster GN=CG17904 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.808e-11
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKG-PDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPG +SE AG+   C GCPNQ  C+   K   DP    + E M  VKHK+L+LSGKG
Sbjct:    7 EHCPGVESEEAGKGSACSGCPNQGLCSDPNKKLEDPGKALVVESMKDVKHKLLILSGKG 65          

HSP 2 Score: 22.3274 bits (46), Expect = 1.808e-11
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKST ++ L+  LA
Sbjct:   64 KGGVGKSTVTSLLTRYLA 81          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_DROER (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Drosophila erecta GN=GG22765 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.808e-11
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKG-PDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPG +SE AG++  C GCPNQ  C+   K   DP    + E M  VKHK+L+LSGKG
Sbjct:    7 EHCPGLESEQAGKASACAGCPNQGVCSDPNKKLEDPGKALVVESMKDVKHKLLILSGKG 65          

HSP 2 Score: 22.3274 bits (46), Expect = 1.808e-11
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKST ++ L+  LA
Sbjct:   64 KGGVGKSTVTSLLTRYLA 81          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_DROGR (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Drosophila grimshawi GN=GH11560 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.135e-11
Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKG-PDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPG +SE AG    C GCPNQ  C+   K   DP    +A  M  VKHK+L+LSGKG
Sbjct:    7 EHCPGVESEQAGRVSACAGCPNQSICSDPTKKLEDPGKALVAAAMKDVKHKLLILSGKG 65          

HSP 2 Score: 21.9422 bits (45), Expect = 5.135e-11
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKST +  L+  LA
Sbjct:   64 KGGVGKSTVTTLLTRYLA 81          
The following BLAST results are available for this feature:
BLAST of FC876182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NUBP1_MOUSE3.224e-1555.56Cytosolic Fe-S cluster assembly factor NUBP1 OS=Mu... [more]
NUBP1_CAEBR3.227e-1553.03Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_BOVIN1.195e-1455.56Cytosolic Fe-S cluster assembly factor NUBP1 OS=Bo... [more]
NUBP1_CAEEL1.554e-1450.00Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_HUMAN2.017e-1455.56Cytosolic Fe-S cluster assembly factor NUBP1 OS=Ho... [more]
NUBP1_DROSI1.073e-1152.54Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_DROSE1.393e-1152.54Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_DROME1.808e-1152.54Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_DROER1.808e-1152.54Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_DROGR5.135e-1152.54Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001C10EF DevOvary1 Citrus clementina cDNA clone C32001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876182 ID=FC876182; Name=FC876182; organism=Citrus clementina; type=EST; length=731bp
GAAAACAAACCAAATTGGCAAATTCCCAAAACCTAAAAATCCCTAAATTT
ATCTCCGCTTCCCCAGCTGCTCCATCAGCTTCTCACTTCACTCTCCTCCG
GCAGCCAACAGCCGACGTTTATTGCCCCACCCTAACACCGAATTAAGGAG
CCACCACCTTCAGCAGCGATCCACCGTTCACGCGCGACGCAGCAGAGCCA
GCAACCCAGCAGTAGTGCAGCACCAAACGGGCGACGCAACAGTGACCCAC
ACCCACCAGCACCACCGTGCGACGTAGCTGCAGCCAATCGAACACGCGCG
ACGCAGCAGCAGCTATCTCAGCTCCAACGCGACCTGAACCCAGCAGCACC
AGCAGCGCACGCGAACCAACAGCAAACCATCACCAACTCCATCCCAACTC
TCCTCCTTTGCTTTCATTCACATACTAAGAAGCAGAAGAACTACTATTAT
AAGAGAAGCCACCAATGGAGAATGGAGAAATTCCAGAAAATGCTAATGAA
CATTGCCCTGGTCCTCAATCAGAGTCTGCAGGAGAATCTGATGATTGCCA
AGGATGCCCTAATCAAGAAGCTTGTGCTACCGCCCCAAAAGGCCCTGACC
CTGACTTGGTTGCTATTGCTGAACGAATGGCTACTGTTAAGCATAAGATA
CTGGTTTTATCGGGTAAGGGGTGGAGTTGGAAAAAGCACATTCTCTGCCC
AGCTCTCATATGCACTAGCGGCTATGGATTT
back to top