FC876211
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876211 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16 Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 3 Query: 498 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRK 689 +LIHA+S+LAI A QV+LMGAVEGYR A G GE D LYPGG FDPLGLADDP+ F EL++++ Sbjct: 4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKE 70
BLAST of FC876211 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15 Identity = 62/157 (39.49%), Postives = 81/157 (51.59%), Query Frame = 3 Query: 243 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAELRLRKSRMEG 704 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF QI+ + +D+ + A+ A QVV +E +R GG L E D YPG FDPL L + AE++ + M G Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTEYTKEAEIKNGRLAMNG 509 HSP 2 Score: 79.337 bits (194), Expect = 8.261e-15 Identity = 54/152 (35.53%), Postives = 74/152 (48.68%), Query Frame = 3 Query: 234 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELR 680 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + L + + + E +R GG GE+ D YPG FDPL L D AE++ Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTDYTRAAEVK 316 HSP 3 Score: 21.557 bits (44), Expect = 8.261e-15 Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 2 Query: 686 EIKNGRLAMFSMFG 727 E+KNGRLA+ ++ G Sbjct: 314 EVKNGRLALTAVAG 327 HSP 4 Score: 70.0922 bits (170), Expect = 1.545e-12 Identity = 51/148 (34.46%), Postives = 73/148 (49.32%), Query Frame = 3 Query: 246 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELR 680 PS+L GE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L G+ +W++A I +V + A G + +A G + E +DP +YPG FDPL L D AE++ Sbjct: 12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEIK 128 HSP 5 Score: 23.0978 bits (48), Expect = 1.545e-12 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2 Query: 686 EIKNGRLAMFSMFG 727 EIKNGRLA+ ++ G Sbjct: 126 EIKNGRLALTALLG 139
BLAST of FC876211 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.218e-12 Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 3 Query: 246 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 665 P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+ W+ AG + F+ ++ L H I W + G+V ++ P GEV YPGG F+PL A EA Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA 200 HSP 2 Score: 25.0238 bits (53), Expect = 1.218e-12 Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2 Query: 674 AQVKEIKNGRLAMFSMFG 727 A+ KEI NGRLAM + G Sbjct: 200 AKEKEIANGRLAMLAFLG 217
BLAST of FC876211 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.582e-12 Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 3 Query: 246 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 665 P YLTG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+ W+ AG Q F+ ++ L H I W + G+V ++ P GEV YPGG F+PL A EA Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA 201 HSP 2 Score: 24.2534 bits (51), Expect = 1.582e-12 Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2 Query: 674 AQVKEIKNGRLAMFSMFG 727 A+ KE+ NGRLAM + G Sbjct: 201 AKEKELANGRLAMLAFLG 218
BLAST of FC876211 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12 Identity = 80/245 (32.65%), Postives = 111/245 (45.31%), Query Frame = 3 Query: 54 MATSTMALSSS--FVGKAVNLA------PSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE------------VTDPLYPGGS-FDPLGLADDPEAFAELRLRK 689 MAT + SSS F +AV + PS S G + R + V G G DR + S + SYL G PGDYG+D GLS DPE F + R L EVI+ R+AMLGA+G + PE L + G+ E WF+ G I G +Y + ++ ++ LMG E R G +G+ +P YPGG F+PLG D ++ EL+L++ Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKGLV--RAAATPPVKQG----GVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 227
BLAST of FC876211 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12 Identity = 74/240 (30.83%), Postives = 106/240 (44.17%), Query Frame = 3 Query: 54 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELRLRK 689 MAT + SSS ++ + G RIS T S ++ +P + L S + SYL G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + PE+L + G+ E WF+ G I G +Y + ++ ++ LMG E R LG DP YPGG F+PLG D ++ EL+L++ Sbjct: 1 MATQALISSSS-----ISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKE 225 The following BLAST results are available for this feature:
BLAST of FC876211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876211 ID=FC876211; Name=FC876211; organism=Citrus clementina; type=EST; length=727bpback to top |