FC876212

Overview
NameFC876212
Unique NameFC876212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFFG_HAEIN (dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae GN=rffG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 67/182 (36.81%), Postives = 99/182 (54.40%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGE--TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            NIL+TG +GFI S +  R I N+ +  ++ +DKL Y +N   L   + +  + F + DI   +++  +      D +MH AA++HVD S   + +F + NI GT+ LLE  K              RF H+STDEVYG+    E A     E S   P++PYSA+KA +  LV A+ R+YGL
Sbjct:    3 NILVTGGSGFIGSALI-RYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDEAKKTTFRFHHISTDEVYGDLSLSEPAFT---EQSPYHPSSPYSASKAASNHLVQAWHRTYGL 180          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_RHISN (Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03580 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22
Identity = 65/179 (36.31%), Postives = 97/179 (54.19%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV----TGQIR----RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            IL+TG AGFI S +   L+    E  ++ +DKL Y  NL +L P +   N++F+R DI     +N    T   D ++H AA++HVD S   + +F + N+ GT  +LE  +       Q R    + +HVSTDEVYG   +       E S   P++PYSA+KA ++    A+ R+YGL
Sbjct:    3 ILVTGGAGFIGSALVRYLVSINAE--VLNVDKLTYAGNLASLKPVEGLRNYRFLRADICDRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQNRKAFFKMLHVSTDEVYGSLGDRGQF--EEVSPYDPSSPYSASKAASDHFATAWQRTYGL 177          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 66/178 (37.08%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  161 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            L+TG AGFI  +     +      ++V LD L Y  NL  L   + +++  FV+GDI    LV  LL     D +++FAA++HVD S      F + N+ GT  LLEA +              RF+HVSTDEVYG   E       E +   P +PYSA+KA ++ LV A+  +YGL
Sbjct:    5 LVTGGAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGL 178          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: STRE_STRGR (dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIR--NYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            ++L+TGAAGFI S     L+     P+  +  LD L Y  N  NL   +    ++F RGDI  A       +    D ++H AA++HVD S  ++  F + N++GT  LL+A    G +  F+ VSTDEVYG  +  +     E   L P +PYSA+KA  ++L +A+  S+GL
Sbjct:    4 HLLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDICDAPGRR---VMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHG-VASFVQVSTDEVYGSLEHGSWT---EDEPLRPNSPYSASKASGDLLALAHHVSHGL 170          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 66/178 (37.08%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  161 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            L+TG AGFI  +     +      ++V LD L Y  NL  L   + +++  FV+GDI    LV  LL     D +++FAA++HVD S      F + N+ GT  LLEA +              RF+HVSTDEVYG   E       E +   P +PYSA+KA ++ LV A+  +YGL
Sbjct:    5 LVTGRAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGL 178          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20
Identity = 66/178 (37.08%), Postives = 93/178 (52.25%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD------YCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFE-FTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            IL+TGAAGFI SH+C  L+++     I + D +          NLKNL+P K    F F++ ++ +ADL + L   E +D I H AA   V +S+GN F  +  +NI     LLEAC+    I+ F+  ST  VYGE          E + L P +PY  TK   E L   Y +S+G+
Sbjct:    3 ILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEK---RFTFIKENLLTADLASLL---EGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACR-EHSIQTFVFASTSSVYGEKQGKV----SENTSLSPLSPYGVTKLTGEKLCHVYKQSFGI 169          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: YGAE_ERWAM (Uncharacterized protein in galE 3'region (Fragment) OS=Erwinia amylovora PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 58/166 (34.94%), Postives = 87/166 (52.41%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV--------TGQIRRFIHVSTDEVYGET--DEDAVVGNHEASQLLPTNPYSATKA 625
            IL+TG AGFI S V   +I N  +  ++ +DKL Y  NL++L     +    F + DI  ++ +         D +MH AA++HVD S      F + N+ GT+VLLEA ++          +  R  H+STDEV+G+    ED      E +   P++PYSA+KA
Sbjct:    3 ILVTGGAGFIGSAVIRHIINNTDD-TVLNIDKLTYAGNLESLQEISDNPRDHFSKTDICDSESLKRAFNDFEPDVVMHLAAESHVDRSIDGPAAFIETNMIGTYVLLEAARMYWLGLPVERKEAFRLHHISTDEVFGDLHGTEDLFT---EQTAYAPSSPYSASKA 164          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_BACHD (UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            IL+TG AG+I SH    L+    +  ++VLD L           + A S+  F  GDI    L++ +  T SIDT++HFAA + V  S     E+ +NN+ GTH LL+   +   +++ +  ST   YGE  +  +    E+   +PTNPY  TK   E +      +YGL
Sbjct:    3 ILVTGGAGYIGSHTVLFLLEQGEQ--VIVLDNLQKGH-------AGALSDVTFYHGDIRDDQLLDTIFTTHSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKK-MLEHDVKKIVFSSTAATYGEPVQIPI---QESDPTIPTNPYGETKLAIEKMFHWCQEAYGL 160          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 57/171 (33.33%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  161 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITE-SIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            L+TG AG++ S V   L+    E  +VVL  L   +  +  +P+ AS    F RGDI   D +  +     S D ++HFAA + V  S     ++  NN+ GT  LLEA +  G +RR +  ST   YGE ++  +V   E++   PTNPY A+K   + ++     ++GL
Sbjct:    6 LVTGGAGYVGSVVAQHLVEAGNE--VVVLHNLS--TGFRAGVPAGAS----FYRGDIRDQDFMRKVFRGRLSFDGVLHFAAFSQVGESVVKPEKYWDNNVGGTMALLEAMRGAG-VRRLVFSSTAATYGEPEQVPIV---ESAPTRPTNPYGASKLAVDHMITGEAAAHGL 164          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 50/174 (28.74%), Postives = 89/174 (51.15%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 661
            ++L+TG AG+I SH   RL+++   Y++ ++D L          L+ L P       +F+  D+  A  V+ +    + D +MHFAA  +V  S  +  ++  N    T V+LEA     ++++ I+ ST   YGE D+  +V   E +  +P NPY   K  AE +++ + ++
Sbjct:   71 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNLGAVKVLQGLFPEPG--RLQFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAV-ARHKVKKLIYSSTCATYGEPDKMPIV---EVTPQVPINPYGKAKKMAEDMILDFSKN 236          
The following BLAST results are available for this feature:
BLAST of FC876212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RFFG_HAEIN5.169e-2336.81dTDP-glucose 4,6-dehydratase OS=Haemophilus influe... [more]
RFBB_RHISN1.504e-2236.31Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium... [more]
RFBB_XANCB1.964e-2237.08dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
STRE_STRGR2.566e-2236.21dTDP-glucose 4,6-dehydratase OS=Streptomyces grise... [more]
RFBB_XANCP2.566e-2237.08dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
YTCB_BACSU1.839e-2037.08Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
YGAE_ERWAM1.457e-1734.94Uncharacterized protein in galE 3'region (Fragment... [more]
GALE_BACHD2.485e-1733.33UDP-glucose 4-epimerase OS=Bacillus halodurans GN=... [more]
GALE_STRLI8.838e-1533.33UDP-glucose 4-epimerase OS=Streptomyces lividans G... [more]
ARAE3_ARATH1.969e-1428.74Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC32001G06EF DevOvary1 Citrus clementina cDNA clone C32001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876212 ID=FC876212; Name=FC876212; organism=Citrus clementina; type=EST; length=670bp
GCTCACTCTTCAAAAGATCACCGCGGTTTCTTCTCAGTTTCCATTTTCAC
ACAGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCT
TCGTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCC
GAAGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTAT
GCAACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGAC
AAGCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATC
CTCCAACTTTAAGTTTGTTAGGGGGGACATTGCCAGTGCTGACCTTGTCA
ACTTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCG
CAAACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAA
CAATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGC
AGATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACT
GACGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAAC
AAATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTT
ATGGTAGGTCATATGGGCTA
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