FC876212

Overview
NameFC876212
Unique NameFC876212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_ECOLI (UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/165 (30.30%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK---FVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            +L+TG +G+I SH C +L++N   + +++LD L  C++ ++++P       K   FV GDI +  L+  +L   +IDT++HFA    V  S     E+  NN+ GT  L+ A +    ++ FI  S+  VYG+  +   V +       P +PY  +K   E ++
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFIFSSSATVYGDQPKIPYVESFPTG--TPQSPYGKSKLMVEQIL 160          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_SALTY (UDP-glucose 4-epimerase OS=Salmonella typhimurium GN=galE PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 50/165 (30.30%), Postives = 86/165 (52.12%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK---FVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            +L+TG +G+I SH C +L++N   + +V+LD L  C++ ++++P       K   FV GDI +  L+  +L   +IDT++HFA    V  S     E+  NN+ GT  L+ A +    ++  I  S+  VYG+  +   V +       P +PY  +K   E ++
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQN--GHDVVILDNL--CNSKRSVLPVIERLGGKHPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVNGTLRLVSAMR-AANVKNLIFSSSATVYGDQPKIPYVESFPTG--TPQSPYGKSKLMVEQIL 160          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_SALTI (UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 50/165 (30.30%), Postives = 86/165 (52.12%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK---FVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            +L+TG +G+I SH C +L++N   + +V+LD L  C++ ++++P       K   FV GDI +  L+  +L   +IDT++HFA    V  S     E+  NN+ GT  L+ A +    ++  I  S+  VYG+  +   V +       P +PY  +K   E ++
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQN--GHDVVILDNL--CNSKRSVLPVIERLGGKHPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLVSAMR-AANVKNLIFSSSATVYGDQPKIPYVESFPTG--TPQSPYGKSKLMVEQIL 160          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 52/170 (30.59%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG 667
            +L+TG AG++ S VC+ ++     +++ ++D L   +  ++ +P  A+    FV GDI   D+ + +L ++S D ++HFAA++ V  S     E+ ++N+  T  LL+A K    +R  +  ST   YGE +   +    E +   PTNPY ATK   +  + +Y  +YG
Sbjct:    3 LLVTGGAGYVGS-VCSTVLLEQG-HEVTIVDNLT--TGNRDAVPLGAT----FVEGDIK--DVADNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMK-RNNVRNIVFSSTAATYGEPETVPIT---EDAPTHPTNPYGATKLSIDYAITSYAHAYG 158          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 60/174 (34.48%), Postives = 86/174 (49.43%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADL---VNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            IL+TG AGFI SH+ ++LI N   Y +++LD L   +  KN I  KA    +FV  DI   DL   +NF    + ++ ++H AAQ +V NS  N       N+ GT  +LE  +     +     S   VYGE +   V  NH  +   P +PY  +K   E  +  Y R YG+
Sbjct:    2 ILVTGGAGFIGSHIVDKLIEN--NYDVIILDNL--TTGNKNNINPKA----EFVNADIRDKDLDEKINF----KDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVDENHPIN---PLSPYGLSKYVGEEYIKLYNRLYGI 160          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_YERPE (UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 51/165 (30.91%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNL---IPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            +L+TG +G+I SH C +LI     YK V+LD L  C++  ++   I S      +   GDI    L++ +     I  ++HFA    V  S     E+  NN++GT VLLEA +   Q++  I  S+  VYG+  +   V +       P++PY  +K   E ++
Sbjct:    3 VLVTGGSGYIGSHTCVQLIE--AGYKPVILDNL--CNSKSSVLARIHSLTGYTPELYAGDIRDRTLLDSIFAAHPIHAVIHFAGLKAVGESVNRPLEYYNNNVFGTLVLLEAMR-AAQVKNLIFSSSATVYGDQPQIPYVESFPTGS--PSSPYGRSKLMVEQIL 160          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: ARAE3_ORYSJ (Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 50/171 (29.24%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAY 652
            ++L+TG AG+I SH   RL+++   Y++ ++D L   +      L+ L P       +F+  D+     VN +    + D +MHFAA  +V  S      +  N    T ++LEA    G ++  I+ ST   YGE ++  +V   E ++ LP NPY   K  AE +++ +
Sbjct:   65 HVLVTGGAGYIGSHASLRLLKD--NYRVTIVDNLSRGNMGAVKVLQELFPQPG--RLQFIYADLGDQKTVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLLILEAMASHG-VKTLIYSSTCATYGEPEKMPIV---ETTRQLPINPYGKAKKMAEDIILDF 227          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 49/174 (28.16%), Postives = 86/174 (49.43%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 661
            ++L+TG AG+I SH   RL+++   Y++ ++D L          L+ L P       +F+  D+  A+ VN +    + D +MHFAA  +V  S     ++  N    T V+LE     G ++  I+ ST   YGE ++  +    E +  +P NPY   K  AE +++ + ++
Sbjct:   71 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNLGAVKILQQLFPEPGK--LQFIYADLGDANAVNKIFSENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHG-VKTLIYSSTCATYGEPEKMPIT---EETPQVPINPYGKAKKMAEDIILDFSKN 236          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 50/163 (30.67%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCS-NLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            IL+TG AG+I SH C  L+ +   Y+IVVLD L   S    N +      +  F   D+   + V+ +     I+ ++HFA    V  S     ++  NN+ GT +L EA +  G +++ +  S+  VYG  +   +    E   L  TNPY  TK   E ++
Sbjct:    3 ILVTGGAGYIGSHTCVELLNS--GYEIVVLDNLSNSSAEALNRVKEITGKDLTFYEADLLDREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYG-VKKIVFSSSATVYGVPETSPIT---EDFPLGATNPYGQTKLMLEQIL 159          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: ARAE1_ARATH (UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13
Identity = 50/174 (28.74%), Postives = 85/174 (48.85%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 661
            ++L+TG AG+I SH   RL++    Y++ ++D L   +      L+ L P       +F+  D+  A  VN +    + D +MHFAA  +V  S     ++  N    T V+LE     G ++  I+ ST   YGE D   ++   E +  +P NPY   K  AE +++ + ++
Sbjct:   72 HVLVTGGAGYIGSHAALRLLKE--SYRVTIVDNLSRGNLAAVRILQELFPEPG--RLQFIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHG-VKTLIYSSTCATYGEPD---IMPITEETPQVPINPYGKAKKMAEDIILDFSKN 237          
The following BLAST results are available for this feature:
BLAST of FC876212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
GALE_ECOLI2.571e-1430.30UDP-glucose 4-epimerase OS=Escherichia coli (strai... [more]
GALE_SALTY4.386e-1430.30UDP-glucose 4-epimerase OS=Salmonella typhimurium ... [more]
GALE_SALTI4.386e-1430.30UDP-glucose 4-epimerase OS=Salmonella typhi GN=gal... [more]
GALE_CORDI4.386e-1430.59UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
GALE_METJA5.729e-1434.48Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
GALE_YERPE9.772e-1430.91UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE... [more]
ARAE3_ORYSJ9.772e-1429.24Probable UDP-arabinose 4-epimerase 3 OS=Oryza sati... [more]
ARAE2_ARATH9.772e-1428.16Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
GALE_BACSU1.276e-1330.67UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
ARAE1_ARATH1.667e-1328.74UDP-arabinose 4-epimerase 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC32001G06EF DevOvary1 Citrus clementina cDNA clone C32001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876212 ID=FC876212; Name=FC876212; organism=Citrus clementina; type=EST; length=670bp
GCTCACTCTTCAAAAGATCACCGCGGTTTCTTCTCAGTTTCCATTTTCAC
ACAGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCT
TCGTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCC
GAAGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTAT
GCAACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGAC
AAGCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATC
CTCCAACTTTAAGTTTGTTAGGGGGGACATTGCCAGTGCTGACCTTGTCA
ACTTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCG
CAAACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAA
CAATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGC
AGATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACT
GACGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAAC
AAATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTT
ATGGTAGGTCATATGGGCTA
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