FC876212

Overview
NameFC876212
Unique NameFC876212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: EXOB_AZOBR (UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 55/177 (31.07%), Postives = 84/177 (47.46%), Query Frame = 2
Query:  140 TYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            T     +L+TG AG+I SHV + L         V +D  D  +  +  IP+        V GDI SA+L++ ++    +D +MHFA    V  S     ++ +NN   +  LL AC   G I + +  ST  VYG  +    V   E +  +P NPY A+K   E ++   G ++GL
Sbjct:    5 TAASPRVLVTGGAGYIGSHVLHALTD--AGIPAVTID--DLSAGRREAIPAAVP----LVEGDIGSAELLDRVMRDHRVDAVMHFAGSIVVPESVVKPLDYYRNNTANSLTLLGACLRAG-IDKVVFSSTAAVYGAPES---VPIREDAPTVPINPYGASKLMTEQMLRDAGAAHGL 169          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 51/173 (29.48%), Postives = 82/173 (47.40%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 658
            ++L+TG AG+I SH   RL+R+   Y++ ++D L   +      L+ L P       +F+  D+  A  VN +    + D +MHFAA  +V  S      +  N    T  +LEA      ++  I+ ST   YGE D   +    EA+   P NPY   K  AE +++ + +
Sbjct:   51 HVLVTGGAGYIGSHATLRLLRD--NYRVTIVDNLSRGNMGAVRVLQRLFPEPG--RLQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEA-MAAYNVKTLIYSSTCATYGEPDTMPIT---EATPQNPINPYGKAKKMAEDIILDFSK 215          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: YFNG_BACSU (Putative sugar dehydratase/epimerase yfnG OS=Bacillus subtilis GN=yfnG PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 51/179 (28.49%), Postives = 82/179 (45.81%), Query Frame = 2
Query:  134 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            M+ +  KN+ +TG  G + S++   LI        +V D +       NL   +       VRG +    ++   L    IDT+ H AAQ  V  +  N     + NI GT  +LEAC+    I+R I  S+D+ YG+ +    +   E   L   +PY  +K+ A+++   Y  +YGL
Sbjct:    1 MSFWKNKNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQ----SNLYQGEHIKKMNIVRGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPLIKRVIVASSDKAYGDQEN---LPYDENMPLQGKHPYDVSKSCADLISHTYFHTYGL 172          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 53/178 (29.78%), Postives = 88/178 (49.44%), Query Frame = 2
Query:  152 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            KNIL+TG+AGFI  H+   L+ NY + K++ +D L+   N      +N I  K   N+ F++ D +  D +   L  + ID I+H  AQ  V  S  N + + K+N  GT  + E  +    I + ++ S+  VYG   +     +    +  P + Y++TK   E++   Y   YG+
Sbjct:    4 KNILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEI-LKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFAR-RFDIEKVVYASSSSVYGGNRKIPFSEDDRVDK--PISLYASTKRSNELMAHVYHHLYGI 177          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 49/174 (28.16%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 661
            ++L+TG AG+I SH   RL+++   +++ ++D L   +      L+NL         +F+  D+     VN +    + D +MHFAA  +V  S      +  N    T V+LEA      +R  I+ ST   YGE ++  +    E +   P NPY   K  AE +++ + +S
Sbjct:   74 HVLVTGGAGYIGSHAALRLLKD--SFRVTIVDNLSRGNMGAIKVLQNLFSEPG--RLQFIYADLGDPKAVNRIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVLEA-MAAHNVRTLIYSSTCATYGEPEKMPIT---EGTPQFPINPYGKAKKMAEDIILDFSKS 239          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: RFBE_SALTI (CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 53/184 (28.80%), Postives = 86/184 (46.74%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDE-------------DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            +LITG  GF+ S++ +  +    +  ++V D L       NL    +  NF+FV GDI + + V  L+     D+  H A Q  +  S  N     + N+ GT  LLEA +        I+ ST++VYG+ ++             D   G  E++QL   +PY  +K  A+  ++ Y R +GL
Sbjct:    3 LLITGGCGFLGSNLASFALSQGID--LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGL 184          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 47/174 (27.01%), Postives = 85/174 (48.85%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD-----YCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 661
            ++L+TG AG+I SH   RL+R+   Y++ ++D L          L+ L P   +   +F+  D+     V  +    + D +MHFAA  +V  S     ++  N    T  +LEA     ++++ I+ ST   YGE ++  +    E +  +P NPY   K  AE +++ + ++
Sbjct:   96 HVLVTGGAGYIGSHAALRLLRD--SYRVTIVDNLSRGNLGAVKTLQQLFPQ--TGRLQFIYADLGDPLAVEKIFSENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLEA-MARHKVKKLIYSSTCATYGEPEKMPIT---EDTPQVPINPYGKAKKMAEDMILDFSKN 261          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_NEIMA (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup A GN=galE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 49/172 (28.49%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  152 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGET-----DEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            KNIL+TG  GFI SH    L+++   +++V+LD L  C++  N++P   +       F +GDI   +++  +     ID+++HFA    V  S     ++  NN+ G+ VL E     G +   +  S+  VYG+       ED  +G+        T+PY  +K+  E ++
Sbjct:    2 KNILVTGGTGFIGSHTVVSLLKS--GHQVVILDNL--CNSSINILPRLKTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAG-VFSIVFSSSATVYGDPGKVPYTEDMPLGD-------TTSPYGTSKSMVERIL 161          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_LACCA (UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            I + G AG+I SH   +L+    +  +VVLD L   +  +  +  +A    +F +GDI     ++ +   E ID I+HFAA + V  S  +  ++  NN  G   LLEA    G I++ +  ST   YGE  +   V   E    +PTNPY  +K   E ++     +YGL
Sbjct:    3 IAVLGGAGYIGSHTVKQLLAAGED--VVVLDNL--ITGHRKAVDPRA----RFYQGDIRDYHFLSQVFSQEKIDGIVHFAAFSIVPESMKDPLKYFDNNTGGMITLLEAMNQFG-IKKIVFSSTAATYGEPKQ---VPIKETDPQVPTNPYGESKLAMEKIMHWADVAYGL 161          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_KLEPN (UDP-glucose 4-epimerase (Fragment) OS=Klebsiella pneumoniae GN=galE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 40/133 (30.08%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE 547
            +L+TG +G+I SH C +L++    +++V+LD L  C++ + ++P           F+ GDI +   +  +L   +I+ ++HFA    V  S     E+  NN+ GT  L+ A +  G ++ FI  S+  VYG+
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQR--GHEVVILDNL--CNSKRRILPVIERLGGKEATFIEGDIRNEARMTEILHDHAIEAVIHFAGLKAVGESVAKPLEYYDNNVTGTLKLVSAMRAAG-VKNFIFSSSATVYGD 130          
The following BLAST results are available for this feature:
BLAST of FC876212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXOB_AZOBR2.177e-1331.07UDP-glucose 4-epimerase OS=Azospirillum brasilense... [more]
ARAE2_ORYSJ2.843e-1329.48Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
YFNG_BACSU3.713e-1328.49Putative sugar dehydratase/epimerase yfnG OS=Bacil... [more]
Y1055_METJA4.850e-1329.78Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
ARAE1_ORYSJ6.334e-1328.16Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]
RFBE_SALTI3.143e-1228.80CDP-paratose 2-epimerase OS=Salmonella typhi GN=rf... [more]
ARAE4_ARATH5.362e-1227.01Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]
GALE_NEIMA7.003e-1228.49UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_LACCA7.003e-1231.58UDP-glucose 4-epimerase OS=Lactobacillus casei GN=... [more]
GALE_KLEPN7.003e-1230.08UDP-glucose 4-epimerase (Fragment) OS=Klebsiella p... [more]

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Properties
Property NameValue
Genbank descriptionC32001G06EF DevOvary1 Citrus clementina cDNA clone C32001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876212 ID=FC876212; Name=FC876212; organism=Citrus clementina; type=EST; length=670bp
GCTCACTCTTCAAAAGATCACCGCGGTTTCTTCTCAGTTTCCATTTTCAC
ACAGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCT
TCGTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCC
GAAGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTAT
GCAACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGAC
AAGCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATC
CTCCAACTTTAAGTTTGTTAGGGGGGACATTGCCAGTGCTGACCTTGTCA
ACTTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCG
CAAACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAA
CAATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGC
AGATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACT
GACGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAAC
AAATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTT
ATGGTAGGTCATATGGGCTA
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