FC876212

Overview
NameFC876212
Unique NameFC876212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 56/175 (32.00%), Postives = 79/175 (45.14%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD--YCSNLKNLIPSKASSNFKFV-RGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            ++L+TGA GF+ SHV   L +      +V LD  +  Y  +LK    S  SS   FV  GD+  A L+  L    +   +MH AAQ  V  +  N   +  +NI G   LLE CK        +  S+  VYG  ++     +    Q  P + Y+ATK   E +   Y   YGL
Sbjct:   89 SVLVTGATGFVGSHVSLALRKRGDG--VVGLDNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQ--PASLYAATKKAGEEITHTYNHIYGL 259          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_NEIGO (UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae GN=galE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 49/165 (29.70%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSK---ASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            +LITG  GFI SH    L+++   Y  V+LD L  C++   ++P        N  F +GDI    ++  +     I++++HFA    V  S     ++  NN+YG+ VL E     G + + +  S+  VYG  D + V    +       NPY A+KA  E ++
Sbjct:    3 VLITGGTGFIGSHTAVSLVQS--GYDAVILDNL--CNSSAAVLPRLRQITGRNIPFYQGDIRDCQILRQIFSEHEIESVIHFAGLKAVGESVAEPTKYYGNNVYGSLVLAEEMARAG-VLKIVFSSSATVYG--DAEKVPYTEDMRPGDTANPYGASKAMVERML 160          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 52/171 (30.41%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            +L+ G AG+I SH    L++   +  ++VLD L Y  + K + P       KF +GDI    LV+ +L  E ID +MHFAA + V  S     ++  NN+ G   LL+A      ++  +  S+   YG   +  +    E + L P NPY  TK   E ++    ++ G+
Sbjct:    3 VLVIGGAGYIGSHAVRELVKEGND--VLVLDAL-YTGHRKAVDPKA-----KFYQGDIEDTFLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMN-DANVKYLVFSSSAATYGIPKKLPIT---EDTPLNPINPYGETKMMMEKIMAWADKADGI 161          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_ERWAM (UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 51/171 (29.82%), Postives = 80/171 (46.78%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLK-NLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQL-LPTNPYSATKAGAEMLVMAYGRS 661
            +IL+TG AG+I SH    L++   +  +V+LD L   S    N +         F  GD+     +  +     I  ++HFA    V  S     E+ +NN+ GT VLLE  +  G + +FI  S+  VYG    DA V   E + +   T+PY  +K   E ++  Y ++
Sbjct:    2 SILVTGGAGYIGSHTVLSLLQRGDD--VVILDNLSNASRESINRVEKLTGKTATFFEGDLLDRSCLRSVFSAHRISAVIHFAGLKAVGASTRKPLEYYQNNVTGTLVLLEEMRSAG-VNQFIFSSSATVYG---ADAPVPYVETTPIGGTTSPYGTSKLMVEQILRDYAKA 166          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_PASHA (UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLK-NLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            IL+TG AG+I SH    L+    E  IVVLD L   S +    +      + KF +GDI   D++  +     I++++HFA    V  +  N +   KNN+ G+ VL+E   +   +   +  S+  VYG+     +V +        TNPY  +K   E ++
Sbjct:    3 ILVTGGAGYIGSHTLVELLNENRE--IVVLDNLSNSSEVSLERVKQITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGETSENRYVTIKNNVTGSIVLVEE-MLKANVNTIVFSSSATVYGDPQIIPIVESCPVGG--TTNPYGTSKYMVERIL 160          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_NEIMC (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup C GN=galE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  152 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            K IL+TG  GFI SH    L+++   +++V+LD L  C++  N++P   +       F +GDI   +++  +     ID+++HFA    V  S     ++  NN+ G+ VL E     G + + +  S+  VYG  D   V    +      T+PY  +K+  E ++
Sbjct:    2 KKILVTGGTGFIGSHTVVSLLKS--GHQVVILDNL--CNSSINILPRLKTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAG-VFKIVFSSSATVYG--DPGKVPYTEDMQPGDTTSPYGTSKSMVERIL 161          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_NEIMB (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B GN=galE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 48/167 (28.74%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  152 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            K IL+TG  GFI SH    L+++   +++V+LD L  C++  N++P   +       F +GDI   +++  +     ID+++HFA    V  S     ++  NN+ G+ VL E     G +   +  S+  VYG  D   V    +      T+PY A+K+  E ++
Sbjct:    2 KKILVTGGTGFIGSHTVVSLLKS--GHQVVILDNL--CNSSINILPRLKTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAG-VFSIVFSSSATVYG--DPGKVPYTEDMPPGDTTSPYGASKSMVERIL 161          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 50/164 (30.49%), Postives = 81/164 (49.39%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL-DYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE-TDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 643
            IL+TG AG+I SH    LI +   YK++++D L + C +    +      + KF + D+   + +  +  T  I  ++HFAA   V  S     E+  NNI GT  LL   +   +++  +  S+  VYG+ T  D ++   E+    PTNPY  TK   E ++
Sbjct:    8 ILVTGGAGYIGSHTVIELINH--GYKVIIVDNLCNSCYDAVARVEFIVRKSIKFFKLDLRDKEGLAQIFDTFKIKGVIHFAALKAVGESMKLPLEYYDNNICGTITLLNVMR-EHRVKTVVFSSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKYAIENII 168          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: EXOB_RHIME (UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=exoB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 58/178 (32.58%), Postives = 77/178 (43.26%), Query Frame = 2
Query:  155 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVR------GDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            NIL+ G AG+I SH C +L      Y+ VV D L             ++ + +FV+      GDI     ++ +L       I+HFAA   V  S  +   F  NN+ GT  LL A    G I  F+  ST   YG  D    V   E+ +  P NPY  TK   E  +  YG   GL
Sbjct:    5 NILVVGGAGYIGSHTCLQLAAK--GYQPVVYDNL-------------SNGHEEFVKWGVLEKGDIRDRQRLDEVLARHKPRAILHFAAMIEVGESVKDPAAFYDNNVIGTLTLLSAALAAG-IDAFVFSSTCATYGLPDS---VPMDESHKQAPINPYGRTKWICEQALKDYGLYKGL 163          
BLAST of FC876212 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 52/172 (30.23%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  158 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVRGDIASADLVNFLL-ITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 670
            IL+ G AG+I SH+ +RLI    E ++VV+D L    +   + P+      KF +GD+A  + ++ +      +D ++HFAA + V  S     ++  NN  G   LLE     G ++  +  ST   YG  DE  +    E +   P NPY  +K   E ++    R+YG+
Sbjct:    3 ILVLGGAGYIGSHMVDRLIEK-GEEEVVVVDSL-VTGHRAAVHPAA-----KFYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFG-VKYIVFSSTAATYGIPDEIPI---KETTPQRPINPYGESKLMMETIMKWSDRAYGI 163          
The following BLAST results are available for this feature:
BLAST of FC876212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
GAE1_ARATH7.003e-1232.00UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GALE_NEIGO9.146e-1229.70UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae G... [more]
GALE_LACHE9.146e-1230.41UDP-glucose 4-epimerase OS=Lactobacillus helveticu... [more]
GALE_ERWAM1.560e-1129.82UDP-glucose 4-epimerase OS=Erwinia amylovora GN=ga... [more]
GALE_PASHA2.038e-1129.45UDP-glucose 4-epimerase OS=Pasteurella haemolytica... [more]
GALE_NEIMC2.038e-1128.14UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_NEIMB2.038e-1128.74UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GAL10_SCHPO2.038e-1130.49Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]
EXOB_RHIME2.038e-1132.58UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=e... [more]
GALE_STRMU2.661e-1130.23UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]

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Properties
Property NameValue
Genbank descriptionC32001G06EF DevOvary1 Citrus clementina cDNA clone C32001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876212 ID=FC876212; Name=FC876212; organism=Citrus clementina; type=EST; length=670bp
GCTCACTCTTCAAAAGATCACCGCGGTTTCTTCTCAGTTTCCATTTTCAC
ACAGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCT
TCGTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCC
GAAGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTAT
GCAACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGAC
AAGCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATC
CTCCAACTTTAAGTTTGTTAGGGGGGACATTGCCAGTGCTGACCTTGTCA
ACTTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCG
CAAACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAA
CAATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGC
AGATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACT
GACGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAAC
AAATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTT
ATGGTAGGTCATATGGGCTA
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