FC876215

Overview
NameFC876215
Unique NameFC876215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:7..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 68/197 (34.52%), Postives = 99/197 (50.25%), Query Frame = 3
Query:   99 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSN-C----NQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLTWNLHYLRCGEGLG 659
            +A NCG    C  G CCS++G+CG T  +C  GCQS  C     +   G      G AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q++WN +Y   G+ +G
Sbjct:   26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIG 203          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 63/141 (44.68%), Postives = 84/141 (59.57%), Query Frame = 3
Query:  273 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            +  +IS  +FE +L +R         FYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y        E+G+ S             Y+GRGPIQ+++N +Y   G+ +  G D + NPDL+
Sbjct:    1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD------------YFGRGPIQISYNYNYGAAGKAI--GVDLLRNPDLV 111          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 73/201 (36.32%), Postives = 97/201 (48.26%), Query Frame = 3
Query:   99 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPCRGK--YYGRGPIQLTWNLHYLRCG-----EGLGRGE 668
            SA NCG    C  G CCS++G+CG   D+C  GCQ    Q  C    P      +      I++ +    +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC     Y+GRGPIQL+WN +Y   G     +GLG  E
Sbjct:   22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPE 196          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 77/213 (36.15%), Postives = 97/213 (45.54%), Query Frame = 3
Query:  102 AGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREV-GAASSDYCDPN----YPCRG--KYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPD 689
            A NCG    C    CCS FG+CG    +C  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C   E  G     YCD +    YPC    KYYGRGP+QL+WN +Y   G+ +  G D + NP+
Sbjct:   27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAI--GFDGLGNPE 214          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.555e-24
Identity = 57/105 (54.29%), Postives = 67/105 (63.81%), Query Frame = 3
Query:   96 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 392
            GSA  CG      +CPGG CCS +GWCG T+D+C DGCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
BLAST of FC876215 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23
Identity = 67/189 (35.45%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  144 CCSRFGWCGLTIDHCCDGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTCHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC--RGKYYGRGPIQLTWNLHYLRCGEGLGRGEDFVDNPDLL 695
            CCS+ G+CG + D+C  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QL+WN +Y+  G+ L    D +++PD++
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKEL--HFDGLNDPDIV 174          
The following BLAST results are available for this feature:
BLAST of FC876215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ2.036e-2534.52Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_AVESA4.536e-2544.68Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI4_PHAVU5.925e-2536.32Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIP_BETVU5.016e-2436.15Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIC_POPTR8.555e-2454.29Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]
CHIT_DIOJA1.906e-2335.45Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32001G11EF DevOvary1 Citrus clementina cDNA clone C32001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876215 ID=FC876215; Name=FC876215; organism=Citrus clementina; type=EST; length=696bp
AAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGCTTATT
GCGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGAGGCTC
AGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTGTTGTA
GTCGATTTGGTTGGTGTGGCCTAACAATAGACCACTGTTGTGACGGCTGC
CAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGACGACGG
GACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGT
TTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGATGC
TTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTT
TGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTT
TTGCCCAAACTTGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGT
GGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCTGCGTC
GTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGTC
GAGGTCCAATTCAACTCACTTGGAATTTACATTACTTACGGTGCGGAGAA
GGCCTAGGGCGAGGAGAGGACTTTGTTGACAATCCAGACCTTCTTG
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