FC876226

Overview
NameFC876226
Unique NameFC876226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876226_ssr13 microsatellite FC876226_ssr13:13..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:9..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 7.597e-46
Identity = 87/144 (60.42%), Postives = 101/144 (70.14%), Query Frame = 1
Query:  106 SLFATANAKIPGVFAGGP---WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            S  A   A +    AGG    W  A ATFYGGSD SGTMGGACGYGNLY QGYGV+ AALS ALFN+G SCG C+ + C     PQWC  G  A+ +TATN CPPN+A PSD GGWCNPPRPHFD++ P + ++  Y+AGIVPV
Sbjct:    7 SRLALCLAVVAACAAGGAVADWSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGT-AVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPV 149          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.597e-46
Identity = 87/154 (56.49%), Postives = 110/154 (71.43%), Query Frame = 1
Query:   79 MLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC----GGDPQWCNP--GNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            +L   S++ SL +++ A      A G W  AHATFYGG+DASGTMGGACGYGN Y QGYG +TAALS  +F +GLSCGACFEL+C    GGD + C P     +I++TAT+ CP N A P D GGWCNPP  HFDL+ P FL++A++++GIVPV
Sbjct:    9 LLVLLSLSSSLSSSSAA------AAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPV 156          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.296e-45
Identity = 83/147 (56.46%), Postives = 101/147 (68.71%), Query Frame = 1
Query:   91 FSVALSLFATANAKIP---GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            F VAL+    A  K+    G F  GPW+ AHATFYGG D SGT+ GACGY +   +GYGV T A+ST LF  G  CGAC+E+KC   P  C  G   +++TATN CPPN  Q +DNGGWCNPPR HFDL+MP FL++AQ +AGIVP+
Sbjct:   16 FLVALAAGDAAPPKVHRNHGKFTAGPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPI 162          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.296e-45
Identity = 80/123 (65.04%), Postives = 96/123 (78.05%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W    ATFYGG+DASGTMGGACGYGNLY+ GYG NTAALS+ LFN+G SCG C+ + C     PQWC  G  A+ ITATN CPPN+A PS++GGWCNPPRPHFD+A P +L++  Y+AGI+PV
Sbjct:   27 WNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAG-AAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPV 148          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.296e-45
Identity = 88/151 (58.28%), Postives = 105/151 (69.54%), Query Frame = 1
Query:   76 RMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            + L   +V  +LF   +A  P     G     HATFYGGSDASGTMGGACGYG+LYS GYG  TAALSTALFN+G SCG C+ + C    D +WC  G  +++ITATNFCPPNFA P++NGGWCNPP  HFD+A P + K+  YR GIVPV
Sbjct:    3 KSLAGLAVLAALFIAVDAFRPSGLTNG-----HATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKG-ASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPV 147          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 2.444e-44
Identity = 79/123 (64.23%), Postives = 95/123 (77.24%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W S  ATFYGGSDASGTMGGACGYGNLY  GYG NTAALS+ALFN+G SCG C+++ C    +P+WC  G   + IT TN CPPN+A  S++GGWCNPPR HFD+A P +L++  Y+AGIVPV
Sbjct:   32 WSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGR-TVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPV 153          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 4.168e-44
Identity = 78/121 (64.46%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  163 QSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            QSA ATFYGG D SGTMGGACGYGNLY+ GYG+  AALS+ALFN+G  CGAC+ + C     +WC PG  +I ITATN CPPN+A PS++GGWCNPPR HFD++ P +  +A Y+AGIVPV
Sbjct:   29 QSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPV 149          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 5.444e-44
Identity = 81/128 (63.28%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  145 FAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            F    W  A ATFYGGSDASGTMGGACGYG+LYS GYG NTAALST LFN+G SCG C+ + C    D ++C  G  ++ ITATN CPPN+A P+D GGWCNPPR HFD+A P +LK+  Y  GIVPV
Sbjct:   29 FTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGT-SVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPV 155          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 9.286e-44
Identity = 82/142 (57.75%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  103 LSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDP--QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            L +  T  A    + A   W  A ATFYGG+D SGTMGGACGYGNLY QGYG+  AALSTALFN+G +CG C+ + C  D   +WC P   A+ +TATN CPPN+A PSD GGWCNPPR HFD++ P + ++  YRAGIVPV
Sbjct:    8 LLVLCTILAARMALAAADDWIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKP-RGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPV 148          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.213e-43
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W  A ATFYGGSD +GTMGGACGYGNLY+ GYG+N AALS+ALFN+G  CGAC+ + C      WC PG  +I ITATN CPPN+A+ SD GGWCNPPR HFD++ P +  +A Y+AGIVPV
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGT-SITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPV 143          
The following BLAST results are available for this feature:
BLAST of FC876226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EXP31_ORYSJ7.597e-4660.42Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ7.597e-4656.49Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ1.296e-4556.46Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ1.296e-4565.04Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH1.296e-4558.28Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP15_ORYSJ2.444e-4464.23Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ4.168e-4464.46Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ5.444e-4463.28Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP27_ORYSJ9.286e-4457.75Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP33_ORYSJ1.213e-4363.93Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC32002A07EF DevOvary1 Citrus clementina cDNA clone C32002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876226 ID=FC876226; Name=FC876226; organism=Citrus clementina; type=EST; length=522bp
ACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTCTCCCTCTC
TTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTTCTCAGTGG
CACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTGTCTTCGCC
GGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGCAGCGACGC
TTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTACAGCCAGG
GCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGC
TTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATG
GTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAACTTTTGCC
CCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCT
CGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTA
CCGCGCTGGTATCGTCCCCGTT
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