FC876226

Overview
NameFC876226
Unique NameFC876226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876226_ssr13 microsatellite FC876226_ssr13:13..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:9..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.213e-43
Identity = 83/147 (56.46%), Postives = 105/147 (71.43%), Query Frame = 1
Query:   85 CFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            C  +VA  + ATA A            S  ATFYGGSDASGTMGGACGYGNLYS GYG NTAALS+ALFN+G +CG C+++ C   + +WC  G  ++ ITATN CPP++++PS++GGWCNPPR HFD+A P + ++  YR GIVPV
Sbjct:   10 CVAAVAACIAATAAAL-----------SGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGT-SVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPV 144          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.019e-43
Identity = 82/145 (56.55%), Postives = 101/145 (69.66%), Query Frame = 1
Query:   94 SVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSD--NGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            +V +SL A A   +   F    W  AHATFYG   AS TMGGACGYGNLY+ GYG +TAALST LF +G  CG C++++C G    C  G+PAI +TATN CPPN+A+  D   GGWCNPPR HFDL+ P F+++A +RAGIVPV
Sbjct:   16 AVIISL-AGAATTVDAKFRAMQWTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPV 158          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.027e-42
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W    ATFYG  +   T  GACGYG+L+ QGYG+ TAALSTALFNNG  CGAC+E+ C   PQWC PG  +I ITATNFCPP+F +P+DN  WCNPP+ HFDL+ PMFLK+A+Y+AG+VPV
Sbjct:   90 WGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPG--SIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPV 206          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 6.655e-42
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W  A ATFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC+++ C  DPQWC PG  ++ ITATNFCPP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPG--SVKITATNFCPPDYSK--TEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPV 164          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 8.692e-42
Identity = 74/126 (58.73%), Postives = 94/126 (74.60%), Query Frame = 1
Query:  148 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDP-QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            A   W SA ATFYGGSDASGTMGG+CGYGN+YS GYG NT ALS+AL+ +G SCGAC+ + C     +WC  G  ++ +TATN+CPPN+++  D GGWCNPPR HFD++ P +  +A Y +GIVPV
Sbjct:   23 AAQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGT-SVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPV 147          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.135e-41
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W  A ATFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC+++ C  DPQWC PG   I ITATNFCPP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPG--TIKITATNFCPPDYSK--TEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPV 171          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.634e-41
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W  A ATFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+E+ C  DPQWC PG  ++ ITATNFCP N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPV 174          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.634e-41
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W  A ATFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+E+ C  DPQWC PG  ++ ITATNFCP N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPV 168          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.534e-38
Identity = 74/123 (60.16%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W    ATFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFNNG SCG C+ + C  D  P  C  G  AI +T TNFCPPN+  P   GGWCN  RPHFD++ P +  +  Y AGIVP+
Sbjct:   23 WLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGT-AITVTGTNFCPPNYDLP--YGGWCNTTRPHFDMSQPAWENIGIYSAGIVPI 142          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.418e-38
Identity = 72/127 (56.69%), Postives = 86/127 (67.72%), Query Frame = 1
Query:  148 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            A   W    ATFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFN+G SCG C+ + C     P WC  G  AI +T TN+CPPN+  P   GGWCN  RPHFD++ P +  +  Y AGI+P+
Sbjct:   19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGK-AITVTGTNYCPPNYDLP--YGGWCNATRPHFDMSQPAWENIGIYNAGIIPI 142          
The following BLAST results are available for this feature:
BLAST of FC876226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EXP12_ORYSJ1.213e-4356.46Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ6.019e-4356.55Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP24_ARATH1.027e-4263.64Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP23_ARATH6.655e-4261.16Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXPA9_ORYSJ8.692e-4258.73Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ARATH1.135e-4161.98Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP26_ARATH5.634e-4161.16Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH5.634e-4161.16Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP18_ORYSJ1.534e-3860.16Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ3.418e-3856.69Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC32002A07EF DevOvary1 Citrus clementina cDNA clone C32002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876226 ID=FC876226; Name=FC876226; organism=Citrus clementina; type=EST; length=522bp
ACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTCTCCCTCTC
TTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTTCTCAGTGG
CACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTGTCTTCGCC
GGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGCAGCGACGC
TTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTACAGCCAGG
GCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGC
TTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATG
GTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAACTTTTGCC
CCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCT
CGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTA
CCGCGCTGGTATCGTCCCCGTT
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