FC876226

Overview
NameFC876226
Unique NameFC876226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876226_ssr13 microsatellite FC876226_ssr13:13..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:9..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.178e-36
Identity = 72/123 (58.54%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGT-MGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W    ATFYG     G   GGACGY  N     Y   TAALST LF +G  CG C+EL+C   P WCNPG+P+++IT TN CPPN+  P+D+GGWCNPPR HFD+A P FLKLAQ  AGIVPV
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPV 173          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.146e-32
Identity = 67/127 (52.76%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  148 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            A   W    ATFYGG+D SGTMGGACGYGNLY Q YG+N AALST LFN+G SCG C+ + C  G  P WC  G  AI +T TN+           GGWCN  RP+FD++ P +  +  Y AGIVP+
Sbjct:   19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGK-AITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPI 133          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 6.243e-32
Identity = 63/128 (49.22%), Postives = 87/128 (67.97%), Query Frame = 1
Query:  139 GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            G  A   W+SA A++Y  +D    +GGACG+G+L   GYG+ T  LSTALF  G +CG C+E+KC  D ++C PG  +I++TATNFC PNF  P+D GG CNPP  HF L +  F K+A ++AG++P+
Sbjct:   26 GSSALSEWRSAKASYYA-ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPI 151          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.065e-31
Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W+ A AT+Y  ++    +GGACGYG+L   GYG+ T  LS  LF  G  CGACFEL+C  D +WC PG  +I++TATNFC PN+    D GG CNPP  HF L +  F K+A ++AG +PV
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGT-SIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPV 159          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.047e-31
Identity = 63/124 (50.81%), Postives = 84/124 (67.74%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQY-RAGIVPV 522
            W  AHAT+YG +D+  ++GGACGY N Y  G+G +TAALS  LF +G SCG C++++C    DP+WC  G  A+ +TATNFCP N     +N GWCN PR HFD++ P F ++A+    GIVPV
Sbjct:   27 WIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRG-AAVTVTATNFCPTN-----NNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPV 144          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 2.623e-30
Identity = 65/122 (53.28%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  160 WQSAHATFYGGSDASGT-MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            W  A A +YG     GT + GACGYG+L   GYG+ TAALSTALFN+G SCGAC+E+ C  +PQ C  G  +I ITAT+ CPP  A       WC  P  HFDL++PMF+K+AQ +A +VPV
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSG--SIKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPV 157          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.880e-28
Identity = 61/149 (40.94%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   82 LCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            LC F +   LF           A   W+ A AT     D S ++  GGACGYG+L    +   +A LS  LFN G SCGAC E++C    +WC  G+P++++TAT+FCPPN    SD GGWCN P+ H +L+   F  +A+ RA ++P+
Sbjct:   10 LCLFFILCRLFQAT--------AEDDWKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPI 150          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.732e-26
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  214 GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            GGACGYG+L    YG  TA +S ALF  G +CG C+E++C     WC  G+P +++TAT+FC PN     D GGWCN P+ HF+++   FL++A+ +A IVPV
Sbjct:   52 GGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPV 154          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.809e-24
Identity = 68/137 (49.64%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  127 AKIPGVFAG----GPWQSAHATFYGGSDASGTM-GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522
            AK+P V  G    GPW   HATFYGG DASGT  GGACGY +  + GYG  TAA+S ALF+NG  CGAC+ELK  GD          +++TATN  PP       NG        HFDL MP FL +A+ + G+VPV
Sbjct:   67 AKMPHVNHGRYKCGPWVDGHATFYGGRDASGTTEGGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELK--GD------SGKTVVVTATNQAPPPV-----NG----MKGEHFDLTMPAFLSIAEEKLGVVPV 184          
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.477e-13
Identity = 50/145 (34.48%), Postives = 68/145 (46.90%), Query Frame = 1
Query:   70 LFRMLCFFSV--ALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA 495
            L R + F S+  A  +F +  A          W  A AT+YG +D  G+ GGACGYG L           A+S  LF  G  CGAC++++C  D   C+    A+ +  T+ CP         GG C   R HFDL+   F +LA
Sbjct:   13 LIRSVLFVSLLSAAFVFDSGEAGAAHRVVDPEWHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRC-LDASICS--RRAVTVIVTDECP---------GGVCAFGRTHFDLSGAAFARLA 145          
The following BLAST results are available for this feature:
BLAST of FC876226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EXP17_ORYSJ4.178e-3658.54Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ2.146e-3252.76Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ6.243e-3249.22Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH1.065e-3150.41Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP12_ARATH4.047e-3150.81Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP21_ARATH2.623e-3053.28Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH1.880e-2840.94Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP16_ORYSJ8.732e-2648.54Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ2.809e-2449.64Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB16_ORYSJ8.477e-1334.48Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC32002A07EF DevOvary1 Citrus clementina cDNA clone C32002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876226 ID=FC876226; Name=FC876226; organism=Citrus clementina; type=EST; length=522bp
ACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTCTCCCTCTC
TTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTTCTCAGTGG
CACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTGTCTTCGCC
GGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGCAGCGACGC
TTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTACAGCCAGG
GCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGC
TTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATG
GTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAACTTTTGCC
CCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCT
CGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTA
CCGCGCTGGTATCGTCCCCGTT
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