FC876228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14 Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 117 DRVKVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350 D K P DF CP+SLE+M DPVI+++G T++RA IQRW+D G+ TCP T+ L + +L PN+ LRSLIS + Sbjct: 231 DESKKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKL-ENFTLTPNYVLRSLISRW 307
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.408e-14 Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 3 Query: 117 DRVKVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350 D K D T P+DF CPISLE+M DP I+S+G T++R+ IQRW+D G+ +CP T+ L + +L PN+ LRSLIS + Sbjct: 234 DSQKSDNLT-IPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKL-ENFTLTPNYVLRSLISQW 309
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB22_ARATH (U-box domain-containing protein 22 OS=Arabidopsis thaliana GN=PUB22 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.839e-14 Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 3 Query: 129 VDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHR-TCPITKLPLPDQPSLIPNHALRSLISNF---------TRTPLPKPQL 380 +D + P F CPISL+IM DPVI+S+G T+DR SI++WL SG + +CP+TK + + L PNH LR LI ++ R P PKP + Sbjct: 1 MDQEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVI-TETDLTPNHTLRRLIQSWCTLNASYGIERIPTPKPPI 93
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 2.402e-14 Identity = 40/98 (40.82%), Postives = 65/98 (66.33%), Query Frame = 3 Query: 156 DFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLES 449 DF CP+SLE+M+DPVI+SSG T+++A I+RW+D G + CP T+ L +LIPN+ +++LI+N+ T ++ +PN T ++ L+ S +S Sbjct: 233 DFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTL-THTTLIPNYTVKALIANWCET----NDVKLPDPNKSTSLNELSPLLSCTDS 325
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB23_ARATH (U-box domain-containing protein 23 OS=Arabidopsis thaliana GN=PUB23 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.138e-14 Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 3 Query: 129 VDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHR-TCPITKLPLPDQPSLIPNHALRSLISNF---------TRTPLPKPQL 380 +D + P F CPISLEIM DPVI+S+G T+DR SI++WL +G + +CP+TK + D L PNH LR LI ++ R P P+P + Sbjct: 6 MDEEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITD-ADLTPNHTLRRLIQSWCTLNASYGVERIPTPRPPI 98
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 4.098e-14 Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 3 Query: 33 MKLKISXXXXXXXVSKNLINPSRVSCVRDRVKVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPL 365 M L + VSK I P V+ + V++ + P F CPIS E+M DPVI++SG T+DR +I++W +SG++TCP+T L IPNH +R +I + + L Sbjct: 1 MGLSLRVRRRGGSVSKKEIIP--VTSCSEEVEITI----PSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQ-IPNHTIRRMIQGWCGSSL 104
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB9_ARATH (U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 5.352e-14 Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 356 P++F CP+S E+M DPV+L+SG T+D+ IQ+WL SG+RTCP T+ LP +L PN +R +IS + + Sbjct: 75 PEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLP-HTALTPNLLIREMISKWCK 142
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 5.352e-14 Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP--DQPSLIPNHALRSLISNF 350 P +F CPIS+++M DPVI+S+G T+DR SI+ W++SG++TCP+T L DQ IPNH +R +I + Sbjct: 32 PPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQ---IPNHTIRKMIQGW 97
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB16_ARATH (U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 5.352e-14 Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLI 341 P DF CPI+LE+M DPV++++G T+DR SI W+ SGH TCP T L SL+PN AL++LI Sbjct: 275 PADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVL-KHTSLVPNRALKNLI 337
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 1.557e-13 Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 102 VSCVRDRV------KVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350 V C+R+ + +V P F CP+S E+M DPVI++SG TFDR SI++WLD+G CP T+ L Q LIPN+ ++++I+++ Sbjct: 217 VLCIREHMLKTEFLEVAKGISIPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQ-ELIPNYTVKAMIASW 304 The following BLAST results are available for this feature:
BLAST of FC876228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876228 ID=FC876228; Name=FC876228; organism=Citrus clementina; type=EST; length=459bpback to top |