FC876228

Overview
NameFC876228
Unique NameFC876228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB55_ARATH (Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3
Query:  144 QFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350
            Q P  F CPIS E+M +P + + G T++  S++ WLD+GH T P+T L L    +L+PNHALRS I  +
Sbjct:  496 QPPSYFICPISQEVMREPRVAADGFTYEAESLREWLDNGHETSPMTNLKLAHN-NLVPNHALRSAIQEW 563          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB5_ARATH (U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350
            P+ F C +S  +M DPVI+SSG+TF+R  IQ+W D G+ +CPI+K  L D  +L PN  L+S IS +
Sbjct:  182 PEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKL-DDFTLKPNVELKSQISEW 247          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: WSDU1_CHICK (WD repeat, SAM and U-box domain-containing protein 1 OS=Gallus gallus GN=WDSUB1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  129 VDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 359
            V +    PD+F CPI+ E+M DPVI + G+++++ +++ W+ +  R+ P+T LPLP    L PN  L+  IS +  T
Sbjct:  398 VSVPVAVPDEFLCPITRELMKDPVIAADGYSYEKEAMENWISNNRRSSPMTNLPLPSL-VLTPNRTLKMAISRWLET 473          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB54_ARATH (U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  153 DDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350
            +DF CPIS+EIM DP + + G T++    ++WL SG RT P T  PL +  +L+PNH LR +I ++
Sbjct:  235 EDFKCPISMEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPL-ENHNLVPNHTLRIIIKDW 299          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: WSDU1_MOUSE (WD repeat, SAM and U-box domain-containing protein 1 OS=Mus musculus GN=Wdsub1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  120 RVKVD-MATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 359
            R K+D +++  PD+F CPI+ E+M DPVI S G++++R +++ W+    RT P+T L LP    L PN  L+  I+ +  T
Sbjct:  392 RAKMDSLSSGIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNLALPSL-VLTPNRTLKMAINRWLET 471          
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: WSDU1_HUMAN (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 3
Query:   99 RVSCVRDRVKVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 359
            ++  +R +VK  +++  PD+F CPI+ E+M DPVI S G+++++ +++ W+    RT P+T L LP    L PN  L+  I+ +  T
Sbjct:  389 KIEELRTKVK-SLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLP-SAVLTPNRTLKMAINRWLET 473          
The following BLAST results are available for this feature:
BLAST of FC876228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PUB55_ARATH1.116e-1146.38Putative U-box domain-containing protein 55 OS=Ara... [more]
PUB5_ARATH1.904e-1149.25U-box domain-containing protein 5 OS=Arabidopsis t... [more]
WSDU1_CHICK4.241e-1137.66WD repeat, SAM and U-box domain-containing protein... [more]
PUB54_ARATH4.241e-1145.45U-box domain-containing protein 54 OS=Arabidopsis ... [more]
WSDU1_MOUSE7.233e-1139.51WD repeat, SAM and U-box domain-containing protein... [more]
WSDU1_HUMAN9.447e-1135.63WD repeat, SAM and U-box domain-containing protein... [more]

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Properties
Property NameValue
Genbank descriptionC32002A09EF DevOvary1 Citrus clementina cDNA clone C32002A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876228 ID=FC876228; Name=FC876228; organism=Citrus clementina; type=EST; length=459bp
AGATAGGGGTCCTGCATTTGCTGGACAGATAGATGAAACTGAAAATCTCA
TAGGCAGCAGCAGCGGCAGCAGTTTCCAAAAACCTCATAAACCCCTCTCG
AGTTAGCTGTGTTCGAGACCGAGTCAAAGTAGATATGGCGACTCAGTTCC
CGGACGATTTCAATTGTCCGATTTCTCTAGAAATAATGTCCGACCCGGTC
ATACTCTCCTCTGGCCACACCTTTGACCGAGCGTCAATCCAACGGTGGCT
GGACTCCGGTCACCGTACTTGTCCAATTACTAAACTACCCCTCCCTGACC
AACCCTCTCTTATCCCCAACCACGCTCTGAGATCTTTAATTTCCAATTTT
ACCCGCACCCCATTACCGAAACCACAGCTCGAACACGCAAACCCGAACCC
ACAAACCCTAATCTCCGTGCTCACATCAAAATCTTCCCCTCTCGAGTCCA
AACTCGAGT
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