FC876228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB55_ARATH (Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11 Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3 Query: 144 QFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350 Q P F CPIS E+M +P + + G T++ S++ WLD+GH T P+T L L +L+PNHALRS I + Sbjct: 496 QPPSYFICPISQEVMREPRVAADGFTYEAESLREWLDNGHETSPMTNLKLAHN-NLVPNHALRSAIQEW 563
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB5_ARATH (U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11 Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350 P+ F C +S +M DPVI+SSG+TF+R IQ+W D G+ +CPI+K L D +L PN L+S IS + Sbjct: 182 PEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKL-DDFTLKPNVELKSQISEW 247
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: WSDU1_CHICK (WD repeat, SAM and U-box domain-containing protein 1 OS=Gallus gallus GN=WDSUB1 PE=2 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11 Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 3 Query: 129 VDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 359 V + PD+F CPI+ E+M DPVI + G+++++ +++ W+ + R+ P+T LPLP L PN L+ IS + T Sbjct: 398 VSVPVAVPDEFLCPITRELMKDPVIAADGYSYEKEAMENWISNNRRSSPMTNLPLPSL-VLTPNRTLKMAISRWLET 473
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB54_ARATH (U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11 Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 3 Query: 153 DDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 350 +DF CPIS+EIM DP + + G T++ ++WL SG RT P T PL + +L+PNH LR +I ++ Sbjct: 235 EDFKCPISMEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPL-ENHNLVPNHTLRIIIKDW 299
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: WSDU1_MOUSE (WD repeat, SAM and U-box domain-containing protein 1 OS=Mus musculus GN=Wdsub1 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11 Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 3 Query: 120 RVKVD-MATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 359 R K+D +++ PD+F CPI+ E+M DPVI S G++++R +++ W+ RT P+T L LP L PN L+ I+ + T Sbjct: 392 RAKMDSLSSGIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNLALPSL-VLTPNRTLKMAINRWLET 471
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: WSDU1_HUMAN (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3) HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11 Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 3 Query: 99 RVSCVRDRVKVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 359 ++ +R +VK +++ PD+F CPI+ E+M DPVI S G+++++ +++ W+ RT P+T L LP L PN L+ I+ + T Sbjct: 389 KIEELRTKVK-SLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLP-SAVLTPNRTLKMAINRWLET 473 The following BLAST results are available for this feature:
BLAST of FC876228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876228 ID=FC876228; Name=FC876228; organism=Citrus clementina; type=EST; length=459bpback to top |