FC876309

Overview
NameFC876309
Unique NameFC876309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:1..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.855e-50
Identity = 101/150 (67.33%), Postives = 114/150 (76.00%), Query Frame = 2
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQN 577
            MAKD   A   ++  KDY+DPPP PL DA ELTKWS YRA+IAEF+A            IGYK QTD A +     C GVG+LGIAWAFGGMIF+LVYCTA +SGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGAI GVGLVK FQ+
Sbjct:    1 MAKDIEAA--AAHEGKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQS 148          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.870e-50
Identity = 99/148 (66.89%), Postives = 107/148 (72.30%), Query Frame = 2
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQN 577
            MAKD  V E G  +A+DY DPPP P FD  EL KW  YRA+IAEF+A            IGYK+QTD       C GVGILGIAWAFGGMIFVLVYCTA ISGGHINPAVT GLFLARKVSLVR V+Y+VAQCLGAI G G VK FQ+
Sbjct:    1 MAKDLDVNESGPPAARDYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQS 148          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.157e-49
Identity = 103/151 (68.21%), Postives = 109/151 (72.19%), Query Frame = 2
Query:  134 MAKDTG-VAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDG---CAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            MAKD   V E G YSAKDY DPPP PL D  ELTKWS YRA IAEFIA            IGYK Q+D    + G   C GVGILGIAWAFGGMIF+LVYCTA ISGGHINPAVTFGLFL RKVSLVRA++YM+AQC GAI G GL K FQ
Sbjct:    1 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDT--KIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQ 149          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.185e-49
Identity = 94/148 (63.51%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQN 577
            MAKD        +  +DY DPPP P  D  EL KWSFYRA+IAEF+A            IGYK Q+D       C GVGILGIAWAFGGMIF+LVYCTA ISGGHINPAVTFGLFLARKVSL RA++Y++AQCLGAI GVG VK FQ+
Sbjct:    1 MAKDVEAVPGEGFQTRDYQDPPPAPFIDGAELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQS 148          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.200e-48
Identity = 100/148 (67.57%), Postives = 108/148 (72.97%), Query Frame = 2
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQN 577
            M KD  + E  S S KDY DPPP   F+  EL KWSFYRA+IAEFIA            IG+KSQTD       CA VG+LGI+WAFGGMIF+LVYCTA ISGGHINPAVTFGLFLA KVSLVRAV YMVAQCLGA  GVGLVKVFQ+
Sbjct:    1 MTKDE-LTEEESLSGKDYLDPPPVKTFEVRELKKWSFYRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQS 147          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.015e-47
Identity = 97/150 (64.67%), Postives = 108/150 (72.00%), Query Frame = 2
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQN 577
            M K+  V+   +  A+DY DPPP PL D  EL KWS YRALIAEF+A            IGYK QTD A N     C GVG+LGIAWAFGGMIF+LVYCTA +SGGHINPAVT GLFLARKVSLVRA++YM AQCLGAI GV LVK FQ+
Sbjct:    1 MGKEVDVSTLEAGGARDYIDPPPAPLVDVDELGKWSLYRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQS 150          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.732e-47
Identity = 98/140 (70.00%), Postives = 104/140 (74.29%), Query Frame = 2
Query:  152 VAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVF 571
            V+E G +  KDY DPPP PL D  EL  WSFYRA+IAEFIA            IG+K+QT P      C GVG+LGIAWAFGGMIFVLVYCTA ISGGHINPAVTFGLFLARKVSL RAV YMVAQCLGAI GVGLVK F
Sbjct:    5 VSEEGRHG-KDYVDPPPAPLLDMAELKLWSFYRAIIAEFIATLLFLYVTVATVIGHKNQTGP------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAF 137          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 6.582e-47
Identity = 97/141 (68.79%), Postives = 104/141 (73.76%), Query Frame = 2
Query:  152 VAEHG-SYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVF 571
            V+E G ++  KDY DPPP PL D  EL  WSFYRALIAEFIA            IG+K QT P      C GVG+LGIAWAFGGMIFVLVYCTA ISGGHINPAVTFGLFLARKVSLVRA+ YM+AQCLGAI GVG VK F
Sbjct:    5 VSEEGKTHHGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGP------CDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAF 139          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.582e-47
Identity = 95/150 (63.33%), Postives = 109/150 (72.67%), Query Frame = 2
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQN 577
            M K+  V   G    +DY DPPP PL D  EL +WS YRA+IAEF+A            IGYK QTD + + D   C GVG+LGIAWAFGGMIF+LVYCTA ISGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGA+ GV LVK FQ+
Sbjct:    1 MGKEADVEAGG---VRDYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQS 147          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.915e-46
Identity = 95/147 (64.63%), Postives = 105/147 (71.43%), Query Frame = 2
Query:  143 DTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQN 577
            D    E G    +DY DPPP PL D  EL KWS YRA+IAEF+A            IGYK QTD + +     C+GVGILGIAWAFGGMIF+LVYCTA ISGGHINPAVTFGLFLARKVSLVRA++YM AQ LGAI GV LVK FQ+
Sbjct:    6 DVSTLEAGGVRDRDYADPPPAPLIDIDELGKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQS 152          
The following BLAST results are available for this feature:
BLAST of FC876309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PIP25_MAIZE2.855e-5067.33Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP24_ARATH4.870e-5066.89Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP27_MAIZE3.157e-4968.21Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP21_ARATH9.185e-4963.51Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP26_ARATH1.200e-4867.57Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP24_ORYSJ1.015e-4764.67Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP28_ARATH1.732e-4770.00Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP27_ARATH6.582e-4768.79Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP25_ORYSJ6.582e-4763.33Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP26_MAIZE1.915e-4664.63Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32003B12EF DevOvary1 Citrus clementina cDNA clone C32003B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876309 ID=FC876309; Name=FC876309; organism=Citrus clementina; type=EST; length=581bp
GNGATCCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAA
GGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCT
GTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGG
GGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGC
CGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGA
GCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGT
CTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCG
ACGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGC
ATGATCTTTGTCCTCGTTTACTGCACCGCCAGTATCTCAGGTGGTCACAT
TAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGG
TCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGT
GTTGGGTTGGTCAAGGTTTTCCAAAATCTTA
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