FC876309

Overview
NameFC876309
Unique NameFC876309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:1..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.267e-46
Identity = 94/146 (64.38%), Postives = 107/146 (73.29%), Query Frame = 2
Query:  134 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVF 571
            ++++  V +HG    KDY DPPP P FD  EL  WSF+RA IAEFIA            IGYK +TDP      CA VG+LGIAW+FGGMIFVLVYCTA ISGGHINPAVTFGLFLARKVSL+RA++YM+AQC GAI GVGLVK F
Sbjct:    6 ISEEGQVHQHG----KDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDP------CASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAF 141          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 7.277e-46
Identity = 92/129 (71.32%), Postives = 99/129 (76.74%), Query Frame = 2
Query:  179 KDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK 565
            KDYTDPPP PLFD  EL  WSFYRALIAEFIA            IGYK Q+    + D C GVG LGIAWAFGGMIF+LVYCTA ISGGHINPAVTFGL LARKVS++RAVMY+VAQCLG I GVG+VK
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQS----SADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVK 139          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.164e-41
Identity = 88/142 (61.97%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  149 GVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            G A  G+   KDY +PPP PLF+A ELT WSFYRA IAEF+A            +G       +K+   CA VGI GIAW+FGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAI G G+VK FQ
Sbjct:   22 GTAAQGT-EEKDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGV------SKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQ 156          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.206e-41
Identity = 90/149 (60.40%), Postives = 101/149 (67.79%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            FP  +  G +   +   KDY +PPP PLF+  EL+ WSFYRA IAEFIA            +G K     A N+  CA VGI GIAWAFGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RAV YM+ QCLGAI G G+VK FQ
Sbjct:   15 FPERQPIGTSAQST--DKDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKR----APNM--CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQ 155          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.570e-40
Identity = 84/137 (61.31%), Postives = 96/137 (70.07%), Query Frame = 2
Query:  158 EHGSYSAK-DYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK 565
            E G+ +AK  Y DPPP PL D  EL KWS YRALIAEF+A            IGYK+Q      VD C GVG LG+AW+FG  IFVLVYCT  +SGGHINPAVT GLF  RK+SLVR V+Y+VAQCLGAI+G G+VK
Sbjct:   13 EGGAAAAKAPYWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQR---ATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVK 146          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.570e-40
Identity = 84/149 (56.38%), Postives = 99/149 (66.44%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            F   +  G A  G+   KDY +PPP PLF+  EL  WSFYRA IAEF+A            +G       +K+   CA VGI GIAW+FGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGA+ G G+VK FQ
Sbjct:   15 FSERQPIGTAAQGAADDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGV------SKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQ 157          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.570e-40
Identity = 85/142 (59.86%), Postives = 97/142 (68.31%), Query Frame = 2
Query:  149 GVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            G A  G+   KDY +PPP PLF+  EL  WSFYRA IAEF+A            +G       +K+   CA VGI GIAW+FGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ
Sbjct:   22 GTAAQGAGDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGV------SKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQ 157          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.051e-40
Identity = 86/149 (57.72%), Postives = 97/149 (65.10%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            FP  +  G+A       KDY +PPP PLF+  ELT WSFYRA IAEFIA            +G   ++        C  VGI GIAWAFGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RA+ YMV Q LGAI G G+VK F+
Sbjct:   15 FPERQPLGIAAQSQDEPKDYQEPPPAPLFEPSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVRESSK------CKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFE 157          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 3.498e-40
Identity = 88/149 (59.06%), Postives = 98/149 (65.77%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            F   +  G A  GS   KDY +PPP PLF+  EL  WSFYRA IAEF+A            +G  + T        CA VGI GIAW+FGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAI G G+VK FQ
Sbjct:   15 FSERQPIGTAAQGS-DDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSK------CATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQ 156          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.569e-40
Identity = 88/149 (59.06%), Postives = 101/149 (67.79%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            FP  +  G +   + S KDY +PPP PLF+  EL  WSF+RA IAEFIA            +G K      ++ + CA VGI GIAWAFGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RAV Y+V QCLGAI G G+VK FQ
Sbjct:   15 FPERQPIGTS---AQSDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVK------RSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQ 154          
The following BLAST results are available for this feature:
BLAST of FC876309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PIP1_ATRCA3.267e-4664.38Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_ORYSJ7.277e-4671.32Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP15_MAIZE3.164e-4161.97Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP14_ARATH9.206e-4160.40Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP27_ORYSJ1.570e-4061.31Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP12_MAIZE1.570e-4056.38Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP11_ORYSJ1.570e-4059.86Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP2_PEA2.051e-4057.72Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP12_ORYSJ3.498e-4059.06Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH4.569e-4059.06Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionC32003B12EF DevOvary1 Citrus clementina cDNA clone C32003B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876309 ID=FC876309; Name=FC876309; organism=Citrus clementina; type=EST; length=581bp
GNGATCCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAA
GGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCT
GTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGG
GGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGC
CGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGA
GCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGT
CTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCG
ACGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGC
ATGATCTTTGTCCTCGTTTACTGCACCGCCAGTATCTCAGGTGGTCACAT
TAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGG
TCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGT
GTTGGGTTGGTCAAGGTTTTCCAAAATCTTA
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