FC876309

Overview
NameFC876309
Unique NameFC876309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:1..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.967e-40
Identity = 89/149 (59.73%), Postives = 101/149 (67.79%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            FP  +  G +   + + KDY +PPP P F+  EL+ WSFYRA IAEFIA            +G K     A N+  CA VGI GIAWAFGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RAV Y+V QCLGAI G G+VK FQ
Sbjct:   15 FPERQPIGTS---AQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKR----APNM--CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQ 154          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 7.793e-40
Identity = 89/149 (59.73%), Postives = 99/149 (66.44%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            FP  +  G A      +KDY +PPP P F+  EL  WSFYRA IAEFIA            +G K     A N+  CA VGI GIAWAFGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ
Sbjct:   15 FPERQPIGTA--AQTESKDYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKR----APNM--CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQ 155          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.736e-39
Identity = 85/142 (59.86%), Postives = 95/142 (66.90%), Query Frame = 2
Query:  149 GVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            G A  G+   KDY +PP  P+F+  ELT WSFYRA IAEF+A            +G        K+   CA VGI GIAW+FGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RAV YM  QCLGAI G G+VK FQ
Sbjct:   22 GTAAQGA-EEKDYREPPAAPVFEVEELTSWSFYRAGIAEFVATFLFLYISILTVMGVN------KSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQ 156          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.736e-39
Identity = 85/152 (55.92%), Postives = 100/152 (65.79%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSA---KDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            F   +  G A  G+ +    KDY +PPP PLF+  EL  WSFYRA IAEF+A            +G       +K+   CA VGI GIAW+FGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGAI G G+VK FQ
Sbjct:   15 FSERQPIGTAAQGAGAGDDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGV------SKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQ 160          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.268e-39
Identity = 86/149 (57.72%), Postives = 101/149 (67.79%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            FP  +  G +   + S KDY +PPP P F+  EL+ WSF+RA IAEFIA            +G K      ++ + CA VGI GIAWAFGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ
Sbjct:   15 FPERQPIGTS---AQSDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVK------RSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQ 154          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.268e-39
Identity = 86/149 (57.72%), Postives = 101/149 (67.79%), Query Frame = 2
Query:  128 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            FP  +  G +   + S KDY +PPP P F+  EL+ WSF+RA IAEFIA            +G K      ++ + CA VGI GIAWAFGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ
Sbjct:   15 FPERQPIGTS---AQSDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVK------RSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQ 154          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.868e-39
Identity = 82/131 (62.60%), Postives = 93/131 (70.99%), Query Frame = 2
Query:  179 KDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVF 571
            KDY +PPP PLF+  EL+ WSFYRA IAEF+A            +G K      ++   C+ VGI G+AWAFGGMIF LVYCTA ISGGHINPAVTFGLFLARK+SL RAV YMV QCLGAI G G+VK F
Sbjct:   30 KDYKEPPPAPLFEPGELSSWSFYRAGIAEFMATFLFLYITILTVMGLK------RSDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGF 154          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.274e-38
Identity = 83/155 (53.55%), Postives = 101/155 (65.16%), Query Frame = 2
Query:  107 LQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVF 571
            +++ V  FP  +  G A       +DY++PP  PLF+A EL+ WSFYRA IAEF+A            +G       +K+   C  VGI GIAWAFGGMIF LVYCTA +SGGHINPAVTFGL LARK+SL RAV Y+V QCLGA+ G G+VK F
Sbjct:   15 VRVGVDRFPERQPIGTAADDL--GRDYSEPPAAPLFEASELSSWSFYRAGIAEFVATFLFLYVTVLTVMGV------SKSPSKCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAF 161          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36
Identity = 76/129 (58.91%), Postives = 87/129 (67.44%), Query Frame = 2
Query:  179 KDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK 565
            KDY DPPP PL D  EL KWS YRA IAEF A            IG K Q+       G  G G+LGIAWAFGG+IFVLVYCTA ISGGH+NPAVTF + LAR+VSL RA +Y +AQC+GA+ G GL +
Sbjct:   12 KDYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQS-------GEGGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLAR 133          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36
Identity = 82/142 (57.75%), Postives = 94/142 (66.20%), Query Frame = 2
Query:  149 GVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKVFQ 574
            G A  G+   KDY +PPP PLF+  EL  WSFYR  IAEF+A            +G       +K+   CA VGI GIAW+FGGMI  LVYCTA ISG HINPAVTFGLFLARK+SL RAV Y++ QCLGAI G G+VK FQ
Sbjct:   22 GTAAQGT-DDKDYKEPPPAPLFEPGELKSWSFYRPGIAEFVATFLFLYISILTVMGV------SKSTSKCATVGIQGIAWSFGGMILALVYCTAGISG-HINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQ 155          
The following BLAST results are available for this feature:
BLAST of FC876309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PIP13_ARATH5.967e-4059.73Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP15_ARATH7.793e-4059.73Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ORYSJ1.736e-3959.86Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP13_MAIZE1.736e-3955.92Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP11_VICFA2.268e-3957.72Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.268e-3957.72Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP1_SOLLC3.868e-3962.60Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP16_MAIZE3.274e-3853.55Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ5.227e-3658.91Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP11_MAIZE5.227e-3657.75Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32003B12EF DevOvary1 Citrus clementina cDNA clone C32003B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876309 ID=FC876309; Name=FC876309; organism=Citrus clementina; type=EST; length=581bp
GNGATCCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAA
GGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCT
GTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGG
GGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGC
CGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGA
GCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGT
CTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCG
ACGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGC
ATGATCTTTGTCCTCGTTTACTGCACCGCCAGTATCTCAGGTGGTCACAT
TAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGG
TCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGT
GTTGGGTTGGTCAAGGTTTTCCAAAATCTTA
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