FC876309

Overview
NameFC876309
Unique NameFC876309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:1..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  218 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYK-----SQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 562
            A E  K  F+RA++AEF+A            +G+K     +QT    NV          ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+MY++AQC+GAI    ++
Sbjct:    2 ASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK---------VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAIL 112          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.809e-12
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  239 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 562
            +F++A+ AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  239 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 562
            +F++A+ AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++V Y+ AQCLGAI G G++
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 2
Query:  218 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGV-GILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAI 544
            A E  K  F+RA++AEF+A            +G+     P K+      V   + ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RA+MY++AQC+GAI
Sbjct:    2 ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHY---PIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAI 108          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  218 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGV-GILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 562
            A E  K  F+RA++AEF+A            +G+     P K+      V   + ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RA+MY++AQC+GAI    ++
Sbjct:    2 ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHY---PIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAIL 114          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 42/115 (36.52%), Postives = 62/115 (53.91%), Query Frame = 2
Query:  224 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKV 568
            EL+     +A +AEFI+            + +   TD      G    G++  + A    +FV V   A+ISGGH+NPAVTFG F+   +SLV+AV+Y VAQ LG++    L+K+
Sbjct:   13 ELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGG----GTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKI 123          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  224 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 562
            EL   SF+RA++AEF+             +G   +  P  +       G+LG A AFG     LV     +SGGHINPA+T    LA ++SL RA+ Y++AQ LGA++G G++
Sbjct:    3 ELRSSSFWRAILAEFLGSLLYTLLG----LGASLRWAPGPH-------GVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVL 104          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  224 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 562
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ YMVAQ LGA++G  ++
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL 104          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 2
Query:  224 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 562
            E+   +F +A+ AEF+A            + + S               IL IA AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+VAQ +GAI+G G++
Sbjct:    4 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPT-----------ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGIL 105          
BLAST of FC876309 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  248 RALIAEFIAXXXXXXXXXXXXIGYKSQT-----DPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTASISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK 565
            +A +AEFI+            I Y   T     DPA         G++ +A   G  +FV V   A+ISGGH+NPAVTFGL L  +++++  V Y +AQ LGAI G  LV+
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPA---------GLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQ 121          
The following BLAST results are available for this feature:
BLAST of FC876309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
AQP1_HUMAN1.385e-1236.67Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP4_HUMAN1.809e-1237.04Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_BOVIN4.030e-1236.11Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP1_SHEEP4.030e-1238.18Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN4.030e-1236.21Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
TIP12_ORYSJ5.264e-1236.52Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
MIP_CHICK6.875e-1238.05Lens fiber major intrinsic protein OS=Gallus gallu... [more]
MIP_BOVIN2.000e-1137.17Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP5_PIG2.000e-1136.28Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
TIP22_ORYSJ2.612e-1138.74Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC32003B12EF DevOvary1 Citrus clementina cDNA clone C32003B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876309 ID=FC876309; Name=FC876309; organism=Citrus clementina; type=EST; length=581bp
GNGATCCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAA
GGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCT
GTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGG
GGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGC
CGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGA
GCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGT
CTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCG
ACGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGC
ATGATCTTTGTCCTCGTTTACTGCACCGCCAGTATCTCAGGTGGTCACAT
TAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGG
TCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGT
GTTGGGTTGGTCAAGGTTTTCCAAAATCTTA
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