FC876316

Overview
NameFC876316
Unique NameFC876316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:13..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSG_PETHY (Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.257e-30
Identity = 60/84 (71.43%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            MATV+EIR AQRA+GPATVLAIGTA P++  +Q+ YPD+ FRIT S+H TELKEKF+ MC+ SMIKKR++HLTEEILK NPN+C
Sbjct:    1 MATVEEIRKAQRAEGPATVLAIGTANPSNCVDQSAYPDFLFRITTSDHKTELKEKFKHMCEGSMIKKRYLHLTEEILKNNPNIC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS3_MEDSA (Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.257e-30
Identity = 58/84 (69.05%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT++AIGTA P++   Q+ YPD+YF+IT SEH  ELKEKF+RMCDKSMIK+R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRQAQRAEGPATIMAIGTANPSNCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS1_TRISU (Chalcone synthase 1 OS=Trifolium subterraneum GN=CHS1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.257e-30
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA P +   QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK R+M+LTEEILKENP++C
Sbjct:    1 MVSVAEIRKAQRAEGPATILAIGTANPPNRVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS4_PEA (Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.254e-30
Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   Q+ YPD+YFRIT SEH  ELK+KF+RMCDKSMI +R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKIELKQKFQRMCDKSMINRRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS1_PEA (Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.254e-30
Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR  QRA+GPAT+LAIGTA PA+   Q+ YPD+YF+IT SEH T LKEKF+RMCDKSMIK+R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRKPQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYMYLTEEILKENPSLC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS1_MEDSA (Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.556e-30
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT++AIGTA PA+   Q+ YPD+YF+IT SEH  ELKEKF+RMCDKSMIK+R+M+LTEEILK+NP +C
Sbjct:    1 MVSVAEIRQAQRAEGPATIMAIGTANPANCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYMYLTEEILKDNPRVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS1_CICAR (Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.257e-30
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA P++   Q+ YPD+YF+IT SEH  ELK+KF+RMCDKSMIK R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPSNRVEQSTYPDFYFKITNSEHKVELKQKFQRMCDKSMIKSRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS2_HORVU (Chalcone synthase 2 OS=Hordeum vulgare GN=CHS2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.477e-30
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1
Query:   55 VQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            ++E+R AQRA+G ATVLAIGTA PA+   QA YPDYYFR+TKSEH+ +LKEKF+RMCDKSMI+KRHMHLTEEIL +NP +C
Sbjct:    6 LKEVRMAQRAEGLATVLAIGTAVPANCVYQATYPDYYFRVTKSEHLADLKEKFQRMCDKSMIRKRHMHLTEEILIKNPKIC 86          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: THS3_VITVI (Stilbene synthase 3 (Fragment) OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.238e-29
Identity = 59/80 (73.75%), Postives = 72/80 (90.00%), Query Frame = 1
Query:   55 VQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNM 294
            V+EIRNAQRA GPAT+LAIGTATP H   Q+DY DYYFR+TKSE M+ELK+KF R+CDKSMIKKR++HLTEE+L+E+PN+
Sbjct:    1 VEEIRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEPMSELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNI 80          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSF_PETHY (Chalcone synthase F OS=Petunia hybrida GN=CHSF PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 8.023e-29
Identity = 55/84 (65.48%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V+E+R AQR +GPAT+LAIGTATP +  +Q  YPDY+FR+T S+H TELKEKF+RM ++SMIKK ++HLTEEILKENP++C
Sbjct:    1 MVSVEEVRRAQRREGPATILAIGTATPLNCVDQTTYPDYFFRVTNSDHKTELKEKFKRMFERSMIKKSYLHLTEEILKENPSIC 84          
The following BLAST results are available for this feature:
BLAST of FC876316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHSG_PETHY3.257e-3071.43Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=... [more]
CHS3_MEDSA3.257e-3069.05Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1... [more]
CHS1_TRISU3.257e-3071.43Chalcone synthase 1 OS=Trifolium subterraneum GN=C... [more]
CHS4_PEA4.254e-3070.24Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 ... [more]
CHS1_PEA4.254e-3070.24Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 ... [more]
CHS1_MEDSA5.556e-3069.05Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=... [more]
CHS1_CICAR7.257e-3069.05Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=... [more]
CHS2_HORVU9.477e-3072.84Chalcone synthase 2 OS=Hordeum vulgare GN=CHS2 PE=... [more]
THS3_VITVI1.238e-2973.75Stilbene synthase 3 (Fragment) OS=Vitis vinifera P... [more]
CHSF_PETHY8.023e-2965.48Chalcone synthase F OS=Petunia hybrida GN=CHSF PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003C08EF DevOvary1 Citrus clementina cDNA clone C32003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876316 ID=FC876316; Name=FC876316; organism=Citrus clementina; type=EST; length=298bp
ACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAATGGC
AACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCG
TCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGCCAACCAGGCTGAT
TATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGAGCT
TAAAGAGAAGTTCAGGCGCATGTGTGACAAGTCGATGATTAAGAAGCGCC
ACATGCACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGCG
back to top