FC876316

Overview
NameFC876316
Unique NameFC876316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:13..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: THS3_ARAHY (Stilbene synthase 3 OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.369e-28
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V  IR  QRA+GPATVLAIGTA P +  +Q+ Y DYYFR+T SEHMT+LK+KF+R+C+++ IK RHM+LTEEILKENPNMC
Sbjct:    1 MVSVSGIRKVQRAEGPATVLAIGTANPPNCIDQSTYADYYFRVTNSEHMTDLKKKFQRICERTQIKNRHMYLTEEILKENPNMC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.334e-28
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV E R AQRA+GPATVLAIGTATP +  +Q+ Y DYYFRIT SE   ELKEKFRRMC+KSMI  R+MHLTE++LK+NP+ C
Sbjct:    1 MVTVNEFRKAQRAEGPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYMHLTEDLLKQNPSFC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.334e-28
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV E R AQRA+GPATVLAIGTATP +  +Q+ Y DYYFRIT SE   ELKEKFRRMC+KSMI  R+MHLTE++LK+NP+ C
Sbjct:    1 MVTVNEFRKAQRAEGPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYMHLTEDLLKQNPSFC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: THS1_ARAHY (Stilbene synthase 1 OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.049e-28
Identity = 55/84 (65.48%), Postives = 69/84 (82.14%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V  IR  QRA+GPATVLAIGTA P +  +Q+ Y DYYFR+T  EHMT+LK+KF+R+C+++ IK RHM+LTEEILKENPNMC
Sbjct:    1 MVSVSGIRKVQRAEGPATVLAIGTANPPNCVDQSTYADYYFRVTNGEHMTDLKKKFQRICERTQIKNRHMYLTEEILKENPNMC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: ACS2_RUTGR (Acridone synthase 2 OS=Ruta graveolens GN=ACS2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.581e-27
Identity = 53/84 (63.10%), Postives = 71/84 (84.52%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +++E+R AQ+++GPA +LAIGTATP +   QADYPDYYF+ITKSEHMTELK+KF+ +C+KSMI+KRHM  ++E LK NP +C
Sbjct:    1 MESLKEMRKAQKSEGPAAILAIGTATPDNVYIQADYPDYYFKITKSEHMTELKDKFKTLCEKSMIRKRHMCFSQEFLKANPEVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: ACS3_RUTGR (Probable acridone synthase 3 OS=Ruta graveolens GN=ACS3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.509e-27
Identity = 53/84 (63.10%), Postives = 69/84 (82.14%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +++E+R AQ ++GPA +LAIGTA P +   QADYPDYYF++TKSEHMTELK+KFR +C+KSMI+KRHM  +EE LK NP +C
Sbjct:    1 MESLKEMRKAQMSEGPAAILAIGTANPDNVYMQADYPDYYFKMTKSEHMTELKDKFRTLCEKSMIRKRHMCFSEEFLKANPEVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: ACS4_RUTGR (Probable acridone synthase 4 OS=Ruta graveolens GN=ACS4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.808e-27
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNM 294
            M +++E+R AQ ++GPA +LAIGTATP +   QADYPDYYFR+TKSEHMTELK+KFR +C+KSMI+KRHM  +EE LK NP +
Sbjct:    1 MESLKEMRKAQMSEGPAAILAIGTATPNNVYMQADYPDYYFRMTKSEHMTELKDKFRTLCEKSMIRKRHMCFSEEFLKANPEV 83          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSB_PETHY (Chalcone synthase B OS=Petunia hybrida GN=CHSB PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.281e-26
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query:   73 AQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            AQRA+GPA +LAIGTATP H  +Q  YPDYYFR+T S+H+ +LKEKFRR+C K+MIKKRHM LTEE+L++NP +C
Sbjct:   13 AQRAEGPAKILAIGTATPFHWVDQNSYPDYYFRVTNSQHLVDLKEKFRRICSKTMIKKRHMFLTEELLRKNPTLC 87          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_ONOVI (Chalcone synthase OS=Onobrychis viciifolia GN=CHS PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.727e-26
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M  V E R  QRA+GP T+ AI TA P +   Q+ YPD+YF+IT SEH  ELKEKF+RM DKSMIK+R+M+LTEEILKENPN+C
Sbjct:    1 MVDVAESRRTQRAEGPRTIFAIATANPPNCVEQSTYPDFYFKITNSEHKVELKEKFQRMDDKSMIKRRYMYLTEEILKENPNVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: 2PS_GERHY (2-pyrone synthase OS=Gerbera hybrida GN=2PS PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.416e-25
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   55 VQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            V+ IR A RA G AT+LAIGTATP +   QADY DYYFR+TKSEHM +LKEKF+R+C+K+ IKKR++ LTE+ L+ENP MC
Sbjct:    9 VEVIREAGRAQGLATILAIGTATPPNCVAQADYADYYFRVTKSEHMVDLKEKFKRICEKTAIKKRYLALTEDYLQENPTMC 89          
The following BLAST results are available for this feature:
BLAST of FC876316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
THS3_ARAHY1.369e-2866.67Stilbene synthase 3 OS=Arachis hypogaea PE=2 SV=1[more]
CHS9_DAUCA2.334e-2869.05Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]
CHS1_DAUCA2.334e-2869.05Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
THS1_ARAHY3.049e-2865.48Stilbene synthase 1 OS=Arachis hypogaea PE=2 SV=1[more]
ACS2_RUTGR2.581e-2763.10Acridone synthase 2 OS=Ruta graveolens GN=ACS2 PE=... [more]
ACS3_RUTGR7.509e-2763.10Probable acridone synthase 3 OS=Ruta graveolens GN... [more]
ACS4_RUTGR9.808e-2765.06Probable acridone synthase 4 OS=Ruta graveolens GN... [more]
CHSB_PETHY1.281e-2668.00Chalcone synthase B OS=Petunia hybrida GN=CHSB PE=... [more]
CHSY_ONOVI3.727e-2664.29Chalcone synthase OS=Onobrychis viciifolia GN=CHS ... [more]
2PS_GERHY1.416e-2565.432-pyrone synthase OS=Gerbera hybrida GN=2PS PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC32003C08EF DevOvary1 Citrus clementina cDNA clone C32003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876316 ID=FC876316; Name=FC876316; organism=Citrus clementina; type=EST; length=298bp
ACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAATGGC
AACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCG
TCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGCCAACCAGGCTGAT
TATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGAGCT
TAAAGAGAAGTTCAGGCGCATGTGTGACAAGTCGATGATTAAGAAGCGCC
ACATGCACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGCG
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