FC876320

Overview
NameFC876320
Unique NameFC876320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:2..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.816e-35
Identity = 77/143 (53.85%), Postives = 96/143 (67.13%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 514
            VK+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG++K  ++K  D+   + G K V  +  R+P  IPWAETGA+YV+ESTGVFT               VIISAPS DAPMFV+GVN   YK ++
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK-GDVKFSDNGLDVDG-KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYKSDI 143          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.816e-35
Identity = 77/145 (53.10%), Postives = 94/145 (64.83%), Query Frame = 2
Query:   77 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP---VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 502
            M K K+GINGFGRIGRLV R  +++D V++VAVNDPFI  DYM YMFKYDS HG++K   +  +  K ++   K    ++V   ++P EIPW   GAEYVVESTGVFT               VIISAPS DAPMFV+GVN   Y
Sbjct:    1 MSKPKVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFK-GSVSAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVESTGVFTTTDKASAHLKGGAKKVIISAPSADAPMFVMGVNNDMY 144          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.816e-35
Identity = 76/150 (50.67%), Postives = 95/150 (63.33%), Query Frame = 2
Query:   77 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK------PVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 508
            M K K+GINGFGRIGRL  R  +++D V++VA+NDPFI  DYM YMF YDS HG++     K+      L  EK       + VF +++P EI WAE GAEYV+ESTGVFT               V+ISAPS DAPM+V+GVNE +Y P
Sbjct:    1 MVKPKVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHGRFNG---KISTSAGNLVVEKEGKATHTIKVFNLKDPAEIKWAEVGAEYVIESTGVFTTIEKASAHLKGGAKKVVISAPSADAPMYVMGVNEDKYDP 147          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.282e-34
Identity = 75/142 (52.82%), Postives = 94/142 (66.20%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 511
            V +GINGFGRIGR+V R  L    +++VA+NDPFI  +YM YMFKYDSVHG++K   ++ KD K  + G KPV V+G +NP +I W   G +YVVESTGVFT               VIISAPS DAPMFV+G N  +Y P+
Sbjct:    2 VNVGINGFGRIGRIVFRNALLNPKIQVVAINDPFINLEYMVYMFKYDSVHGRFK-GTVEAKDGKLWIQG-KPVIVYGEKNPSDIKWGAAGRDYVVESTGVFTTVEKAEGHLKGGAKKVIISAPSADAPMFVMGCNLDQYDPK 141          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.674e-34
Identity = 76/145 (52.41%), Postives = 95/145 (65.52%), Query Frame = 2
Query:   77 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 511
            M   K+GINGFGRIGR+V R  ++ DD+++VAVNDPFI T+Y  YM KYDS HGQ+K  ++KV  D   + G+K V  +  R+P  IPWAE+ A YVVESTGVFT               V+ISAPS DAPM+V+GVN   Y  E
Sbjct:    1 MAPTKVGINGFGRIGRIVFRNAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHGQFK-GDIKVLSDGLEVNGKK-VKFYTERDPANIPWAESEAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMYVMGVNNETYNGE 143          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.674e-34
Identity = 76/142 (53.52%), Postives = 95/142 (66.90%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 511
            V +GINGFGRIGR+V R  L+   V++VA+NDPFI  DYM YMFKYDSVHG++K   ++ KD K ++ G KP+ +F  ++P  IPW   GA+YVVESTGVFT               V+ISAPS DAPMFV GVN   Y P+
Sbjct:    2 VNVGINGFGRIGRIVFRNALEVGGVDVVAINDPFIDLDYMVYMFKYDSVHGRFK-GSIEAKDGKLIVEG-KPIHIFAEKDPANIPWGSVGADYVVESTGVFT-TIDKASAHLKGGEKVVISAPSADAPMFVCGVNLETYDPK 140          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.674e-34
Identity = 77/143 (53.85%), Postives = 93/143 (65.03%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 514
            VK+GINGFGRIGR+V R  ++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV D   L    K V     ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMFV+GVN   YK ++
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFK-GDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMFVMGVNHETYKSDI 143          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.674e-34
Identity = 75/143 (52.45%), Postives = 95/143 (66.43%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 514
            VK+G+NGFGRIGRLV R       VE+VA+NDPFI  +YM YMF+YDS HG++K   +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN+ +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFTSGKVEVVAINDPFIDLNYMVYMFQYDSTHGKFK-GTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNQDKYDNSL 142          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.674e-34
Identity = 75/143 (52.45%), Postives = 94/143 (65.73%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 514
            VK+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HG +K   +K ++ K ++ G   +T+F  R+P  I WA+ GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFK-GTVKAENGKLVINGH-AITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDKSL 142          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.187e-34
Identity = 76/143 (53.15%), Postives = 92/143 (64.34%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 514
            VK+GINGFGRIGRLV R       VE+VA+NDPFI  DYM YMF+YDS HG++K  E+K +  K ++ G   +TV+  R+P  I W + GA YVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGINGFGRIGRLVTRAAFLTKKVEIVAINDPFIDLDYMVYMFQYDSTHGKYK-GEVKAEGGKLVIDGH-AITVYSERDPANIKWGDAGATYVVESTGVFTTIEKASAHIKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
The following BLAST results are available for this feature:
BLAST of FC876320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P_COCIM9.816e-3553.85Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_BRUMA9.816e-3553.10Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P1_GLORO9.816e-3550.67Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_LYOSH1.282e-3452.82Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P_SCLSC1.674e-3452.41Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_PLESA1.674e-3453.52Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_CURLU1.674e-3453.85Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_CRIGR1.674e-3452.45Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_CHICK1.674e-3452.45Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_DANRE2.187e-3453.15Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionC32003D02EF DevOvary1 Citrus clementina cDNA clone C32003D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876320 ID=FC876320; Name=FC876320; organism=Citrus clementina; type=EST; length=514bp
GACCACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCA
CCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATC
AACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAG
GGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATT
ACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCAC
CATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCC
TGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGA
CTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGAT
AAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGC
CCCCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGT
ACAAACCAGAGCTC
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