FC876320

Overview
NameFC876320
Unique NameFC876320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:2..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.417e-33
Identity = 71/140 (50.71%), Postives = 95/140 (67.86%), Query Frame = 2
Query:   89 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 508
            K+GINGFGRIGR+V R  L    +++VA+NDPFI  +YM YMFKYDS HG++    +++KD K ++ G   + V   R+P +I W+ +GA+YV+ESTGVFT               VIISAPSKDAPM+VVGVNE ++ P
Sbjct:    5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDG-SVEIKDGKLVIDGNA-IDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNP 142          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.851e-33
Identity = 68/143 (47.55%), Postives = 96/143 (67.13%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 514
            + +GINGFGRIGRLV R+ L R D+++VA+NDPFI  +Y +YMFKYDS HG++   E+  + +  ++ G+K + V+  R+P  IPW + G +YV++STGVF                V+I+APS  APMFVVGVNE +Y P+L
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKDIQIVAINDPFIAPEYASYMFKYDSTHGRYS-GEVSHEGENIVIDGKK-IRVYQERDPVNIPWGKDGVDYVIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYTPDL 143          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.851e-33
Identity = 71/142 (50.00%), Postives = 92/142 (64.79%), Query Frame = 2
Query:   89 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 514
            K+GINGFGRIGR+V R  ++ + V++VAVNDPFI   Y  YM KYDS HG++  +     D  TL+   K +  +  R+P +IPW+ETGAEYVVESTGVFT               VIISAPS D+PMFV+GVN  +Y  ++
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRF--NGTVEFDGNTLIVNGKKIKFYAERDPAQIPWSETGAEYVVESTGVFTKQEKASLHLKGGAKKVIISAPSSDSPMFVMGVNNDQYTKDI 144          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.418e-33
Identity = 76/143 (53.15%), Postives = 91/143 (63.64%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 514
            VK+GINGFGRIGR+V R  ++  +V +VAVNDPFI T Y  YM KYDS HGQ+K   + V  +   + G K VT +  R+P  IPW + G EYVVESTGVFT               VIISAPS DAPMFV+GVNE  Y P +
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFK-GTIDVNSNGLTVNG-KAVTFYQERDPASIPWGKHGVEYVVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNEKTYDPSV 143          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.418e-33
Identity = 74/146 (50.68%), Postives = 94/146 (64.38%), Query Frame = 2
Query:   77 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE----KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 502
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K   +K + D  ++  E      + V+  ++P EI W   GA+YVVESTGVFT               VIISAPS DAPMFVVGVN  +Y
Sbjct:    1 MSKPTVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFK-GTVKHEGDYLIVANEGKSQHKIKVYNSKDPAEIQWGAAGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.124e-33
Identity = 76/142 (53.52%), Postives = 89/142 (62.68%), Query Frame = 2
Query:   89 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 514
            KIGINGFGRIGRLV R  L +   E+VAVNDPFI  +YM Y+FKYDS HG++K       D   L+   K +TVF  R+P  I WA  GAEY+VESTGVFT               V+ISAPS DAPMFV GVN   Y P++
Sbjct:    3 KIGINGFGRIGRLVLRAALDKG-AEVVAVNDPFIDVNYMVYLFKYDSTHGRFKG--TVAADGGFLVVNGKKITVFCERDPTNINWASAGAEYIVESTGVFTTIDKASAHFKGGAKKVVISAPSADAPMFVCGVNLEAYSPDM 141          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.124e-33
Identity = 75/139 (53.96%), Postives = 88/139 (63.31%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 502
            VK+GINGFGRIGR+V R   +  DVE+VAVNDPFI   Y  YM KYDS HG +K        D  L+ G K V  +  R+P  IPW+ETGA+Y+VESTGVFT               VIISAPS DAPM+V+GVNE  Y
Sbjct:    3 VKVGINGFGRIGRIVFRNAHEHSDVEIVAVNDPFIEPHYAAYMLKYDSQHGNFKGDVTVEGSD--LVVGGKKVRFYTERDPAAIPWSETGADYIVESTGVFTTTEKAKAHLKGGAKKVIISAPSADAPMYVMGVNEKTY 139          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.124e-33
Identity = 72/144 (50.00%), Postives = 96/144 (66.67%), Query Frame = 2
Query:   77 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 508
            M ++ +GINGFGRIGRLV R  LQ+  +++ A+NDPFI   YM YMFKYDS HG++K  E+ ++D K ++ G+  ++VF    P EIPW + GA YVVESTGVF                V++SAPS DAPMFV+GVN+ +Y P
Sbjct:    1 MSELCVGINGFGRIGRLVLRACLQKG-IKVTAINDPFIDLQYMVYMFKYDSTHGRYK-GEVHMEDGKLIVDGQ-AISVFQCMKPAEIPWGDAGALYVVESTGVFLSIEKASAHIQGGAKRVVVSAPSPDAPMFVMGVNQDKYDP 141          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.124e-33
Identity = 74/142 (52.11%), Postives = 90/142 (63.38%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 511
            V++GINGFGRIGR+V R      DV++VA+NDPFI  DYM YM KYD+VHG++    ++ KD K ++ G   + V   R+P  IPW   GA+YVVESTGVFT               VIISAPS DAPMFV GVN   YK E
Sbjct:    3 VQVGINGFGRIGRIVLRATESNKDVQVVAINDPFIPLDYMVYMLKYDTVHGRF-DGSVEAKDGKLVVNGH-AIAVSAERDPTSIPWGSAGADYVVESTGVFTTTEAASAHLKGGAKKVIISAPSADAPMFVCGVNLEAYKSE 142          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.386e-33
Identity = 77/143 (53.85%), Postives = 95/143 (66.43%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 514
            VK GINGFGRIGR+V R  L   +VE+VA+NDPFI  +YM YMFKYDS HG++K   ++ KD K ++ G KP++V+  R+P  IP    GAEY+VESTGVFT               VIISAPS DAPMFVVGVN   Y  ++
Sbjct:    3 VKAGINGFGRIGRIVLRASLLNPEVEVVAINDPFIDLEYMVYMFKYDSTHGRFK-GTVEAKDGKLVVNG-KPISVYAERDPCCIP-GRIGAEYIVESTGVFTTKEKAGAHLTGGAKKVIISAPSADAPMFVVGVNLESYSSDM 142          
The following BLAST results are available for this feature:
BLAST of FC876320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P1_SCHPO1.417e-3350.71Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_PICCI1.851e-3347.55Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_MONAN1.851e-3350.00Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_AJECA2.418e-3353.15Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P2_CAEBR2.418e-3350.68Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_GLOMM4.124e-3353.52Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_CRYPA4.124e-3353.96Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3PT_DANRE4.124e-3350.00Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P1_RHIRA4.124e-3352.11Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_RHIMI5.386e-3353.85Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]

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Properties
Property NameValue
Genbank descriptionC32003D02EF DevOvary1 Citrus clementina cDNA clone C32003D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876320 ID=FC876320; Name=FC876320; organism=Citrus clementina; type=EST; length=514bp
GACCACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCA
CCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATC
AACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAG
GGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATT
ACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCAC
CATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCC
TGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGA
CTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGAT
AAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGC
CCCCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGT
ACAAACCAGAGCTC
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