FC876328

Overview
NameFC876328
Unique NameFC876328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10302 contig Ccv1_Contig10302:1..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 46/151 (30.46%), Postives = 67/151 (44.37%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL---TRALASAGTEPVNLAXRLNLCVVN 602
            PPGP P PI GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YR   + E A +    +    A TE V +  RL L + N
Sbjct:   34 PPGPVPVPIFGNWLQVGDDLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPNLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRTGWEAEAAAVVDDVKKNPKAATEGVVIRKRLQLMMYN 184          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 45/151 (29.80%), Postives = 66/151 (43.71%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL---TRALASAGTEPVNLAXRLNLCVVN 602
            PPGP P PI GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YRH  + E A +    R    A    + +  RL L + N
Sbjct:   34 PPGPLPVPIFGNWLQVGDDLNHRNLTQLAKRFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGEGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEAEAAAVVDDVRKNPDAAVSGLVIRRRLQLMMYN 184          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 44/151 (29.14%), Postives = 65/151 (43.05%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRAL---ASAGTEPVNLAXRLNLCVVN 602
            PPGP P PI GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YRH  + E A +   +     A      +  RL L + N
Sbjct:   34 PPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWESEAAAVVEDVKKNPDAAVSGTVIRRRLQLMMYN 184          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 41/125 (32.80%), Postives = 64/125 (51.20%), Query Frame = 3
Query:  165 PGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGP--LMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL 530
            PGPK WPI+G+L  +   +PH+ +  LAR HG   LM   LG              + L     +F+NRP    A+ + +  + I F P G  WR+LR+I+S HLF+ + +  +   RQ ++  +
Sbjct:   80 PGPKGWPIIGSLMDMSVGLPHRKLESLARLHGAKQLMSFSLGCTPAVITSDPEVARELLT--SPHFANRPLKQSAQQLLFG-RAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAM 201          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C82A4_SOYBN (Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 38/116 (32.76%), Postives = 55/116 (47.41%), Query Frame = 3
Query:  180 WPIVGNLPHL--GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEM 521
            WPI G+LP L     PH+++  LA  HGPL  ++LG              +    +D   S RP    A+ + YN   ++  PYGP WR LRKI    + S   ++  + VR  E+
Sbjct:   47 WPIFGHLPLLIGSKSPHKALGALAEKHGPLFTIKLGAKKALVVSDWEMARECFTTNDVAVSARPKLLVAELMCYNNAMLLVAPYGPYWRELRKIIVTEILSSSRVEQLQDVRVSEV 162          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C82A2_SOYBN (Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 37/116 (31.90%), Postives = 54/116 (46.55%), Query Frame = 3
Query:  180 WPIVGNLPHL--GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEM 521
            WPI+G+LP L     PH+++  LA  +GP+  +++G              +    +D   S+ P    A  + YN   IV  PYGP WR LRKI      S   ++   HVR  E+
Sbjct:   44 WPIIGHLPLLLGSKTPHKTLGDLADKYGPIFSIKIGAKNAVVVSNWEMAKECYTTNDIAVSSLPDLISANLLCYNRSMIVVAPYGPYWRQLRKILMSEFLSPSRVEQLHHVRVSEV 159          
The following BLAST results are available for this feature:
BLAST of FC876328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
TCMO_ZINEL2.836e-1130.46Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_PHAAU3.703e-1129.80Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
TCMO_SOYBN4.837e-1129.14Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
C78A4_PINRA4.837e-1132.80Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
C82A4_SOYBN8.250e-1132.76Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=... [more]
C82A2_SOYBN8.250e-1131.90Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32003D11EF DevOvary1 Citrus clementina cDNA clone C32003D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876328 ID=FC876328; Name=FC876328; organism=Citrus clementina; type=EST; length=604bp
GGCGACTACTCGTACCATTTCTACACTTTCTCTGGGAAACGAAACAAAGA
GCAATGTCTACTTTACCACTACTGATACTGTACACATCACTTTTGGCAAT
TGTCATTTCTTTCCTTTTTAGCCTCCTCCGGAACAGACGCAGACACTCCT
CCCACCGTCTGCCTCCCGGTCCGAAACCCTGGCCAATAGTCGGAAACCTC
CCTCACTTGGGCCCTATGCCCCACCAATCCATAGCGGGTCTGGCCCGAAC
CCACGGCCCCCTCATGTACCTCCGGTTAGGCTTCGTTGACGTCGTCGTGG
CCGCTTCCGCTTCCGTGGCGGCCCAATTCCTGAAGATCCATGATTCCAAC
TTCTCCAACCGCCCTCCCAACTCCGGCGCCAAGCACATCGCTTACAACTA
TCAGGACATCGTTTTCCGGCCGTACGGCCCCCGCTGGCGGATGCTGAGGA
AGATCAGCTCCGTTCATCTTTTCTCCGGCAAGGCCTTGGATGACTACAGG
CACGTTCGCCAGGAAGAGATGGCGGTGCTCACGCGCGCGTTGGCGAGTGC
AGGAACGGAGCCGGTGAACTTAGCTCNACGGTTGAACTTGTGCGTTGTGA
ATGC
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