FC876328

Overview
NameFC876328
Unique NameFC876328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10302 contig Ccv1_Contig10302:1..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C76C2_ARATH (Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CYP76C2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 40/131 (30.53%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVF-RPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASA 551
            PPGP   PI+GN+  +G  PH S A L++T+GP+M L+ G              + L+ +D   S+R P +  + I ++   +V+  P   RWR+LRK+S+  LFS + ++  + +R+ ++  L   ++ +
Sbjct:   39 PPGPPRLPIIGNIHLVGRNPHHSFADLSKTYGPIMSLKFGSLNTVVVTSPEAAREVLRTYDQILSSRTPTNSIRSINHDKVSVVWLPPSSSRWRLLRKLSATQLFSPQRIEATKTLRENKVKELVSFMSES 169          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C71C4_MAIZE (Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 53/150 (35.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGP-LMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEM-AVLTRA-LASAGTEPVNLAXRLNLCVVN 602
            P  P   PI+G+L  +G +P+ S+A LA  +GP LM LRLG                L+ +D  FS+RP +  +  I Y   D  F PYG  +R  RK+ +VHL +   +   R  R+EE+   L R   A+A  EPV+++  L+  V N
Sbjct:   69 PSPPMKLPIIGHLHLMGDIPYVSLAALATRYGPDLMLLRLGAVPTVVVSSPRVAEAVLRTYDHVFSSRPRSLVSDIIMYGATDSCFAPYGDHFRKARKLVTVHLLNASKVRSQRPAREEEVRGALDRVRRAAAAREPVDMSELLHSFVNN 218          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C71DD_MENPI (Cytochrome P450 71D13 OS=Mentha piperita GN=CYP71D13 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.579e-14
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHL-GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL---TRALASAGTEPVNLAXRL 584
            PPGP   P++G+L  L G +P  ++A +A+ +GP+ +++LG              + +K+ D   ++R  + G K + Y+  DI+F PY   WR +RKI    L S + +  +  +RQ+E++ L    R+ A+AG E V+L  R+
Sbjct:   36 PPGPPKLPLIGHLHLLWGKLPQHALASVAKQYGPVAHVQLGEVFSVVLSSREATKEAMKLVDPACADRFESIGTKIMWYDNDDIIFSPYSVHWRQMRKICVSELLSARNVRSFGFIRQDEVSRLLGHLRSSAAAG-EAVDLTERI 179          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C71AJ_ARATH (Cytochrome P450 71A19 OS=Arabidopsis thaliana GN=CYP71A19 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.674e-14
Identity = 42/142 (29.58%), Postives = 68/142 (47.89%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGT----EPVNLA 575
            PP P   P++GNL  L    H+S+  L+  +GPLM L  G                LK +D   +NRP       I    +D+ F PYG  W+ ++ I   +L S K +  Y+ +R++E+ ++   + +A +     PVNL+
Sbjct:   34 PPSPWRLPVIGNLHQLSLNTHRSLRSLSLRYGPLMLLHFGRTPVLIVSSADVAHDILKTYDVICANRPKTKVIDKILRGGRDVAFAPYGEYWKQMKSICIQNLLSNKMVRSYKKIREDEIKLMIEKVENASSCSPPSPVNLS 175          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C76C3_ARATH (Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CYP76C3 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.041e-13
Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQ---EEMAVLTRALASAGTEPVNLA 575
            PPGP   P+VGN+  LG  PH+S+A  ++T+GP+M L+LG              + L+ HD   S R  N   +   ++   IV+ P   RWR L+K  + +L S + LD  + +R    EE+  L       G E ++LA
Sbjct:   39 PPGPPILPLVGNIFQLGFNPHRSLAAFSKTYGPIMSLKLGRLTAVVISSPEAAKEALRTHDHVMSARTFNDALRAFDHHKHSIVWIPPSARWRFLKKTITKYLLSPQNLDAIQSLRMRKVEELVSLVNEFRERG-EAIDLA 178          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C76C1_ARATH (Cytochrome P450 76C1 OS=Arabidopsis thaliana GN=CYP76C1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 40/131 (30.53%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRP-YGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASA 551
            PPGP   PI+GN+  +G  PH+S A L++T+GP+M L+LG              + L+ HD   S R P +  + I +    +V+ P    RWR+LR++S   L S + ++  + +R  ++  L   ++ +
Sbjct:   39 PPGPPRLPIIGNIHLVGKHPHRSFAELSKTYGPVMSLKLGSLNTVVIASPEAAREVLRTHDQILSARSPTNAVRSINHQDASLVWLPSSSARWRLLRRLSVTQLLSPQRIEATKALRMNKVKELVSFISES 169          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C71C3_MAIZE (Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 42/140 (30.00%), Postives = 67/140 (47.86%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGP--LMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGTEPVNLA 575
            P  P   PIVG+L H+GP  H S+  L   +G    ++LR G                ++ HD   ++RP +  +  + YN  D+ F P G  W+  RK+ + HL S K +  +RH R+EE+ ++   L  A  +  + A
Sbjct:   58 PSPPGTLPIVGHLHHIGPQTHISLQELVAKYGHNGFLFLRAGAVPTLIVSSPSAAEAVMRTHDHICASRPWSMASHILRYNTCDVAFSPLGEYWQQTRKLMNTHLLSNKKVYSFRHGREEEVCLVVDNLREAAAKSPSTA 197          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C76C4_ARATH (Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.029e-13
Identity = 44/150 (29.33%), Postives = 73/150 (48.67%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVF-RPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRAL--ASAGTEPVNLAXRLNLCVVN 602
            PPGP   PI+GN+  +G  PH S A LA+ +GP+M L+ G              + L+ HD   S R  N   +   +    +++  P   RWRMLRK+S   +FS +  +  + +R +++  L   +  +S   E V+++      V+N
Sbjct:   39 PPGPPRLPIIGNIHQVGKNPHSSFADLAKIYGPIMSLKFGCLNSVVITSPEAAREVLRTHDQILSGRKSNDSIRCFGHEEVSVIWLPPSSARWRMLRKLSVTLMFSPQRTEATKALRMKKVQELVSFMNESSERKEAVDISRASYTTVLN 188          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C93B1_GLYEC (Licodione synthase OS=Glycyrrhiza echinata GN=CYP93B1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 43/144 (29.86%), Postives = 72/144 (50.00%), Query Frame = 3
Query:  162 PPGPK-PWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGT--EPVNLAXRL 584
            PP P    PI+G++  LGP+ HQS   L+  +GPL  L  G              Q L+ ++  F+ R  ++  K + Y    + F PYG  WR ++K+S   L   +++++++H+R +E   L R L++     E VN+   L
Sbjct:   33 PPSPFFRLPIIGHMHMLGPLLHQSFHNLSHRYGPLFSLNFGSVLCVVASTPHFAKQLLQTNELAFNCRIESTAVKKLTYE-SSLAFAPYGDYWRFIKKLSMNELLGSRSINNFQHLRAQETHQLLRLLSNRARAFEAVNITEEL 175          
BLAST of FC876328 vs. ExPASy Swiss-Prot
Match: C7D94_MENGR (Cytochrome P450 71D94 OS=Mentha gracilis GN=CYP71D94 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.168e-13
Identity = 41/141 (29.08%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  171 PKPWPIVGNLPHL--GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGTEPVNLAXRLN 587
            P   P++G+L  L  G  P   +  +AR +GP+ +++LG              Q +K+ D NF++R  + G++ + Y+  DI+F PY   W  +RKI    L S K +  +  +RQEE+  L R +  +   PV++   ++
Sbjct:   35 PPKLPVIGHLHLLWGGLPPQHLLRSIAREYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRFDSVGSRIMWYDNDDIIFSPYNDHWHQMRKICVSELLSPKNVRSFGFIRQEEIERLIRVMKQSEGAPVDVTEEVS 175          
The following BLAST results are available for this feature:
BLAST of FC876328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
C76C2_ARATH1.606e-1430.53Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CY... [more]
C71C4_MAIZE2.098e-1435.33Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 S... [more]
C71DD_MENPI3.579e-1431.72Cytochrome P450 71D13 OS=Mentha piperita GN=CYP71D... [more]
C71AJ_ARATH4.674e-1429.58Cytochrome P450 71A19 OS=Arabidopsis thaliana GN=C... [more]
C76C3_ARATH1.041e-1333.33Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CY... [more]
C76C1_ARATH1.360e-1330.53Cytochrome P450 76C1 OS=Arabidopsis thaliana GN=CY... [more]
C71C3_MAIZE1.360e-1330.00Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 S... [more]
C76C4_ARATH3.029e-1329.33Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CY... [more]
C93B1_GLYEC3.957e-1329.86Licodione synthase OS=Glycyrrhiza echinata GN=CYP9... [more]
C7D94_MENGR5.168e-1329.08Cytochrome P450 71D94 OS=Mentha gracilis GN=CYP71D... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003D11EF DevOvary1 Citrus clementina cDNA clone C32003D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876328 ID=FC876328; Name=FC876328; organism=Citrus clementina; type=EST; length=604bp
GGCGACTACTCGTACCATTTCTACACTTTCTCTGGGAAACGAAACAAAGA
GCAATGTCTACTTTACCACTACTGATACTGTACACATCACTTTTGGCAAT
TGTCATTTCTTTCCTTTTTAGCCTCCTCCGGAACAGACGCAGACACTCCT
CCCACCGTCTGCCTCCCGGTCCGAAACCCTGGCCAATAGTCGGAAACCTC
CCTCACTTGGGCCCTATGCCCCACCAATCCATAGCGGGTCTGGCCCGAAC
CCACGGCCCCCTCATGTACCTCCGGTTAGGCTTCGTTGACGTCGTCGTGG
CCGCTTCCGCTTCCGTGGCGGCCCAATTCCTGAAGATCCATGATTCCAAC
TTCTCCAACCGCCCTCCCAACTCCGGCGCCAAGCACATCGCTTACAACTA
TCAGGACATCGTTTTCCGGCCGTACGGCCCCCGCTGGCGGATGCTGAGGA
AGATCAGCTCCGTTCATCTTTTCTCCGGCAAGGCCTTGGATGACTACAGG
CACGTTCGCCAGGAAGAGATGGCGGTGCTCACGCGCGCGTTGGCGAGTGC
AGGAACGGAGCCGGTGAACTTAGCTCNACGGTTGAACTTGTGCGTTGTGA
ATGC
back to top