FC876330

Overview
NameFC876330
Unique NameFC876330
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig160 contig Ccv1_Contig160:13..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.925e-17
Identity = 35/101 (34.65%), Postives = 47/101 (46.53%), Query Frame = 2
Query:  239 ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDS 541
            IS+      F+     RN        F+ Y +FITA   ++  GFGTTG    + +E+ AF A    +T+ G+  A  G  AWG CY  E     SYC  S
Sbjct:   85 ISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFR--GFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQS 183          

HSP 2 Score: 42.3578 bits (98), Expect = 2.925e-17
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC PG +YY RG I I +NYNYG  G
Sbjct:  186 WPCAPGQKYYGRGPIQISYNYNYGPCG 212          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.363e-17
Identity = 32/92 (34.78%), Postives = 47/92 (51.09%), Query Frame = 2
Query:  266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDS 541
            F+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   + +YC  S
Sbjct:   89 FDRMLLHRNDGACQAKGFYTYDAFVAAAGAFP--GFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPS 178          

HSP 2 Score: 40.0466 bits (92), Expect = 8.363e-17
Identity = 15/27 (55.56%), Postives = 17/27 (62.96%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC PG  YY RG I +  NYNYG  G
Sbjct:  181 WPCAPGKSYYGRGPIQLSHNYNYGPAG 207          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 8.366e-17
Identity = 32/92 (34.78%), Postives = 47/92 (51.09%), Query Frame = 2
Query:  266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDS 541
            F+     RN     A GF+ Y +F+ A   ++  GFGTTG    + +E+ AFLA    +T+ G+  A  G  AWG C+  E   + +YC  S
Sbjct:   86 FDRMLLHRNDGACQAKGFYTYDAFVAAASAFR--GFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPS 175          

HSP 2 Score: 40.0466 bits (92), Expect = 8.366e-17
Identity = 15/27 (55.56%), Postives = 17/27 (62.96%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC PG  YY RG I +  NYNYG  G
Sbjct:  178 WPCAPGKSYYGRGPIQLSHNYNYGPAG 204          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.087e-16
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = 2
Query:  263 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYC 532
            +F+     RN     A GF+ Y +FI A   +    F TTG    + +E+ AFLA    +T+ G G  A  GP  WG CYN E++P+  YC
Sbjct:   80 RFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFP--AFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPA-DYC 167          

HSP 2 Score: 44.669 bits (104), Expect = 1.087e-16
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            YPC PG +Y+ RG + + WNYNYG  G
Sbjct:  173 YPCAPGKQYFGRGPMQLTWNYNYGQCG 199          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.411e-16
Identity = 31/92 (33.70%), Postives = 45/92 (48.91%), Query Frame = 2
Query:  266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDS 541
            FE     RN     A GF+ Y++F+ A   +    FG TG    + +E+ AFL     +T+ G+  A  GP +WG C+  E +P   YC  S
Sbjct:   98 FERLLLHRNDGACPARGFYTYEAFLAAAAAFP--AFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPS 187          

HSP 2 Score: 40.0466 bits (92), Expect = 1.411e-16
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC PG +YY RG I + +N+NYG  G
Sbjct:  190 WPCAPGRKYYGRGPIQLSFNFNYGPAG 216          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.413e-16
Identity = 34/89 (38.20%), Postives = 45/89 (50.56%), Query Frame = 2
Query:  266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYC 532
            F+     RN       GF+ Y +FI A   +   GFGTTG    K KE+ AFLA    +T+ G+  A  GP AWG C+  E +  + YC
Sbjct:   89 FDQMLKYRNDGRCAGHGFYTYDAFIAAARSFN--GFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYC 175          

HSP 2 Score: 40.4318 bits (93), Expect = 1.413e-16
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC PG +YY RG I +  NYNYG  G
Sbjct:  180 WPCAPGKKYYGRGPIQLTHNYNYGLAG 206          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.838e-16
Identity = 34/89 (38.20%), Postives = 44/89 (49.44%), Query Frame = 2
Query:  266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYC 532
            F +    RN       GF+ Y +FI A   +   GFGTTG    + +EI AFLA    +T+ G+  A  GP AWG CY  E     +YC
Sbjct:   74 FNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFP--GFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYC 160          

HSP 2 Score: 39.6614 bits (91), Expect = 1.838e-16
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC  G +YY RG I I +NYNYG  G
Sbjct:  166 WPCAAGRKYYGRGPIQISYNYNYGQAG 192          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.401e-16
Identity = 32/102 (31.37%), Postives = 49/102 (48.04%), Query Frame = 2
Query:  236 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDS 541
            ++S      QF+     RN     A GF+ Y +F+ A   +   GFG TG+   + +++ AFLA    +T+ G+  A  G  AWG C+  E   +  YC  S
Sbjct:   24 SVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFP--GFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPS 123          

HSP 2 Score: 40.0466 bits (92), Expect = 2.401e-16
Identity = 15/27 (55.56%), Postives = 17/27 (62.96%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC PG  YY RG I +  NYNYG  G
Sbjct:  126 WPCAPGKRYYGRGPIQLSHNYNYGPAG 152          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.098e-16
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  239 ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYN 547
            +SD     +F+     RN     A GF+ Y +FI+A  ++    FG TG  L + +EI AFL     +T+ G+  A  GP AWG CY  E++  Q YCD S N
Sbjct:   89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPD--FGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSN 188          

HSP 2 Score: 37.7354 bits (86), Expect = 3.098e-16
Identity = 14/27 (51.85%), Postives = 16/27 (59.26%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            Y C  G +Y  RG I + WNYNYG  G
Sbjct:  189 YQCVAGKQYCGRGPIQLSWNYNYGLCG 215          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.035e-16
Identity = 36/123 (29.27%), Postives = 52/123 (42.28%), Query Frame = 2
Query:  203 CPTWSKFCCNETISD----YFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYNTHIP 559
            C     +CC   +S     +F    FE     RN       GF+ Y ++  AT  Y   GFG TG    + +E+ AF A    +TS    +    P  WG C  +E++P+  YCD    +  P
Sbjct:   47 CGLTVAYCCAGCVSQCRNCFFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYP--GFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYP 167          

HSP 2 Score: 38.891 bits (89), Expect = 4.035e-16
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  550 TYPCTPGAEYYARGAIPIYWNYNYGATG 633
            +YPC   A+YY RG + + WNYNYG  G
Sbjct:  165 SYPCV--ADYYGRGPLQLRWNYNYGECG 190          
The following BLAST results are available for this feature:
BLAST of FC876330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CHI3_TOBAC2.925e-1734.65Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIA_SECCE8.363e-1734.78Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU8.366e-1734.7826 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI1_THECC1.087e-1637.36Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_ORYSJ1.411e-1633.70Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA1.413e-1638.20Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIB_VITVI1.838e-1638.20Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIC_SECCE2.401e-1631.37Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI6_POPTR3.098e-1637.86Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI8_POPTR4.035e-1629.27Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]

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Properties
Property NameValue
Genbank descriptionC32003E01EF DevOvary1 Citrus clementina cDNA clone C32003E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876330 ID=FC876330; Name=FC876330; organism=Citrus clementina; type=EST; length=634bp
GATCTTCCCCCAAGTGAATCTCGCAACAACAGGTAGATCTGGTGAGAACG
AGAAAATAAAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCA
CTAGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAA
GGTGATAGTGAAGAAGGTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGG
AGTGCCCAACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTAT
TTCCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGT
GGCACATGCCGTGGGCTTCTGGGATTATCAGTCTTTCATTACTGCCACCG
TCAAATATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAG
ATGAAGGAGATTTGCGCTTTTCTTGCCCACGTCGGCTGCAAGACCTCTTG
TGGATATGGGGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACA
ACCATGAAATGAGCCCCAGCCAGTCATATTGTGATGATTCCTACAATACA
CATATCCCTGCACCCCTGGAGCTGAGTACTACGCCCGAGGTGCTATACCT
ATATACTGGAACTATAACTATGGAGCTACTGGGG
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