FC876330

Overview
NameFC876330
Unique NameFC876330
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig160 contig Ccv1_Contig160:13..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 2.165e-13
Identity = 30/91 (32.97%), Postives = 45/91 (49.45%), Query Frame = 2
Query:  266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCD 535
            F+     RN     A GF+ Y +F+ A   Y    F TTG      +E+ AFLA    +T+ G+  A  GP +WG C+  E +  + +YC+
Sbjct:   85 FDQMLLHRNDQACAAKGFYTYDAFVAAANAYPD--FATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCE 173          

HSP 2 Score: 39.6614 bits (91), Expect = 2.165e-13
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC  G +YY RG I I +NYNYG  G
Sbjct:  178 WPCAAGKKYYGRGPIQITYNYNYGPAG 204          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.812e-13
Identity = 29/94 (30.85%), Postives = 44/94 (46.81%), Query Frame = 2
Query:  266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPS--QSYCDDS 541
            F+     RN     A  F+ Y +F+ A   +    F TTG    + +E+ AFLA    +T+ G+  A  GP +WG C+  E + +    YC  S
Sbjct:   88 FDQMLLHRNDAACPAKNFYTYDAFVAAANAFP--SFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQS 179          

HSP 2 Score: 39.6614 bits (91), Expect = 2.812e-13
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC  G +YY RG I I +NYNYG  G
Sbjct:  182 WPCAAGKKYYGRGPIQISYNYNYGPAG 208          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 7.989e-13
Identity = 28/90 (31.11%), Postives = 40/90 (44.44%), Query Frame = 2
Query:  263 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYC 532
            QFE     R+     A GF+ Y++F+ A   +    F  TG    + +E+ AFLA     TS       GGP +WG CY      +  +C
Sbjct:  105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFC 185          

HSP 2 Score: 42.3578 bits (98), Expect = 7.989e-13
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC PG  Y+ARG + I +NYNYGA G
Sbjct:  191 WPCAPGKAYHARGPMQIAYNYNYGAAG 217          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 7.989e-13
Identity = 28/90 (31.11%), Postives = 40/90 (44.44%), Query Frame = 2
Query:  263 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYC 532
            QFE     R+     A GF+ Y++F+ A   +    F  TG    + +E+ AFLA     TS       GGP +WG CY      +  +C
Sbjct:  105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFC 185          

HSP 2 Score: 42.3578 bits (98), Expect = 7.989e-13
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC PG  Y+ARG + I +NYNYGA G
Sbjct:  191 WPCAPGKAYHARGPMQIAYNYNYGAAG 217          
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 4.983e-12
Identity = 31/95 (32.63%), Postives = 42/95 (44.21%), Query Frame = 2
Query:  266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMK-EICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEM--SPSQSYCDDS 541
            F+     RN     A  F+ Y +F+ A   +   GF   G   D  K E+ AFLA    +T+ G+  A  GP AWG C+  E   +    YC  S
Sbjct:   90 FDQMLLHRNDAACPASNFYTYDAFVAAASAFP--GFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQS 182          

HSP 2 Score: 37.3502 bits (85), Expect = 4.983e-12
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  553 YPCTPGAEYYARGAIPIYWNYNYGATG 633
            +PC  G +YY RG I + +N+NYG  G
Sbjct:  185 WPCAAGKKYYGRGPIQLSYNFNYGPAG 211          
The following BLAST results are available for this feature:
BLAST of FC876330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CHI3_ORYSJ2.165e-1332.97Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_ORYSJ2.812e-1330.85Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSJ7.989e-1331.11Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI7.989e-1331.11Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI12_ORYSJ4.983e-1232.63Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionC32003E01EF DevOvary1 Citrus clementina cDNA clone C32003E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876330 ID=FC876330; Name=FC876330; organism=Citrus clementina; type=EST; length=634bp
GATCTTCCCCCAAGTGAATCTCGCAACAACAGGTAGATCTGGTGAGAACG
AGAAAATAAAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCA
CTAGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAA
GGTGATAGTGAAGAAGGTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGG
AGTGCCCAACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTAT
TTCCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGT
GGCACATGCCGTGGGCTTCTGGGATTATCAGTCTTTCATTACTGCCACCG
TCAAATATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAG
ATGAAGGAGATTTGCGCTTTTCTTGCCCACGTCGGCTGCAAGACCTCTTG
TGGATATGGGGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACA
ACCATGAAATGAGCCCCAGCCAGTCATATTGTGATGATTCCTACAATACA
CATATCCCTGCACCCCTGGAGCTGAGTACTACGCCCGAGGTGCTATACCT
ATATACTGGAACTATAACTATGGAGCTACTGGGG
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