FC920175

Overview
NameFC920175
Unique NameFC920175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9238 contig Ccv1_Contig9238:61..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920175 vs. ExPASy Swiss-Prot
Match: GHRB_YERPG (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 50/170 (29.41%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  156 AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPIN-AEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSVTYPFYPDVCE---LAANSDVLIICCALTDQTHHLINKQ 650
            +G  +  + L+L P +R     S G ++ DV    +RG+AL +   V +E VAD  + L++   R++      V+ G W  +  +   G  +  K +GI+G+G IG  +A+R    F   V Y SR    +    F    C    L A +D L I   +T+QT+H+I ++
Sbjct:   52 SGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC920175 vs. ExPASy Swiss-Prot
Match: GHRB_YERPE (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 50/170 (29.41%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  156 AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPIN-AEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSVTYPFYPDVCE---LAANSDVLIICCALTDQTHHLINKQ 650
            +G  +  + L+L P +R     S G ++ DV    +RG+AL +   V +E VAD  + L++   R++      V+ G W  +  +   G  +  K +GI+G+G IG  +A+R    F   V Y SR    +    F    C    L A +D L I   +T+QT+H+I ++
Sbjct:   52 SGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC920175 vs. ExPASy Swiss-Prot
Match: GHRB_YERPB (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 50/170 (29.41%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  156 AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPIN-AEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSVTYPFYPDVCE---LAANSDVLIICCALTDQTHHLINKQ 650
            +G  +  + L+L P +R     S G ++ DV    +RG+AL +   V +E VAD  + L++   R++      V+ G W  +  +   G  +  K +GI+G+G IG  +A+R    F   V Y SR    +    F    C    L A +D L I   +T+QT+H+I ++
Sbjct:   52 SGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC920175 vs. ExPASy Swiss-Prot
Match: GHRB_YERPA (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 50/170 (29.41%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  156 AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPIN-AEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSVTYPFYPDVCE---LAANSDVLIICCALTDQTHHLINKQ 650
            +G  +  + L+L P +R     S G ++ DV    +RG+AL +   V +E VAD  + L++   R++      V+ G W  +  +   G  +  K +GI+G+G IG  +A+R    F   V Y SR    +    F    C    L A +D L I   +T+QT+H+I ++
Sbjct:   52 SGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC920175 vs. ExPASy Swiss-Prot
Match: GHRB_YERP3 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 50/170 (29.41%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  156 AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPIN-AEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSVTYPFYPDVCE---LAANSDVLIICCALTDQTHHLINKQ 650
            +G  +  + L+L P +R     S G ++ DV    +RG+AL +   V +E VAD  + L++   R++      V+ G W  +  +   G  +  K +GI+G+G IG  +A+R    F   V Y SR    +    F    C    L A +D L I   +T+QT+H+I ++
Sbjct:   52 SGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGRE 221          
BLAST of FC920175 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP7 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 50/166 (30.12%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  168 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLW--PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINK 647
            V A +L  +P++R     S G ++ DV     R V L +   V +E VAD  + L++   R++      V+ G W   I  ++  G+ +  K +GIVG+G IG  +A+R    FG  + YN+R + P     F   Y D+  L   +D + +   L+++THHL  +
Sbjct:   56 VDAALLEKMPKLRATSTVSVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDW-FGTDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQ 220          
BLAST of FC920175 vs. ExPASy Swiss-Prot
Match: VANH_ENTFC (D-specific alpha-keto acid dehydrogenase OS=Enterococcus faecium GN=vanH PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 54/165 (32.73%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  168 VTAEILRLLPE--VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSED-VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-PFYPDVCELAANSDVLIICCALTDQTHHLINKQ 650
            ++A IL  L    V+ +   S G NHID    +R G+ + N    +S D VADY + L++  +R + +    V +  + ++++   G  L    VG+VG G IG  V +RL  FGC V   SR++   V Y PF     EL  NSD++ +   L   TH++I+ +
Sbjct:   59 ISASILLALKRAGVKYISTRSIGCNHIDTTAAKRMGITVDNVA--YSPDSVADYTMMLILMAVRNVKSIVRSVEKHDFRLDSD--RGKVLSDMTVGVVGTGQIGKAVIERLRGFGCKVLAYSRSRSIEVNYVPF----DELLQNSDIVTLHVPLNTDTHYIISHE 215          
BLAST of FC920175 vs. ExPASy Swiss-Prot
Match: GHRB_PECCP (Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 53/171 (30.99%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  156 AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP--INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSVTYPFYPDVCE---LAANSDVLIICCALTDQTHHLINKQ 650
            +G  V  + L+  P +R     S G +  +V     +GV L +   V +E VAD  L L++   R++      V+ G W   +++++  G+ +  K +GI+G+G IG  VA+R    F   V YN+R         F    C+   L A SD L I   LT +THHLI ++
Sbjct:   48 SGGKVDKDFLQHAPRLRAASTISVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVVEVAERVKAGEWKGGVDSDW-FGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAEAEQRFNARHCDLDTLLAESDFLCITLPLTTETHHLIGRE 217          
BLAST of FC920175 vs. ExPASy Swiss-Prot
Match: GHRB_SERP5 (Glyoxylate/hydroxypyruvate reductase B OS=Serratia proteamaculans (strain 568) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 63/221 (28.51%), Postives = 97/221 (43.89%), Query Frame = 3
Query:   42 EQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLW--PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSVTYPFYPDVCE---LAANSDVLIICCALTDQTHHLINKQSCWPWGKKELLL 686
            EQ FT + F  L         H+ L       + I  S G  +    L+  P++R     S G ++ DV       V L +   V +E VAD  + L++   R++      V+ G W   I A++  G  +  K +GI+G+G IG  +A+R    FG  V YN+R         F    C+   L A SD + I   LTD+T H+I++       K  +L+
Sbjct:   20 EQHFTVHAFDGLTPDN-----HDELRQALQQAEGIIGSGGK-IDEAFLQQTPKLRAASTISVGYDNFDVDALNAHNVLLMHTPTVLTETVADTIMSLVLATARRVVEVAERVKAGEWQGSIGADW-FGVDVHHKTIGILGMGRIGLALAQRAHFGFGMPVLYNARRTHEEAEQRFNARRCDLDTLLAESDFICITLPLTDETFHMISRDQLAKMKKSGILI 233          
BLAST of FC920175 vs. ExPASy Swiss-Prot
Match: DHGY_HYPME (Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 51/181 (28.18%), Postives = 84/181 (46.41%), Query Frame = 3
Query:  126 AHSVKAIFSSAGAPVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPL-GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY-----NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 647
            A SV A+  +       E++  +PE ++ +   S G +HID+  C+ RG+ + NA +  +   A+ A+ LL+   R+    +  +R   WP      L G KL  K +GI G GSIG  +AKR + F   + Y      S + + S    F+  +  L + S    +    T +T +  NK
Sbjct:   44 AKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK 224          
The following BLAST results are available for this feature:
BLAST of FC920175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
GHRB_YERPG2.276e-1329.41Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPE2.276e-1329.41Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPB2.276e-1329.41Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPA2.276e-1329.41Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERP32.276e-1329.41Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_KLEP73.882e-1330.12Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
VANH_ENTFC5.070e-1332.73D-specific alpha-keto acid dehydrogenase OS=Entero... [more]
GHRB_PECCP5.070e-1330.99Glyoxylate/hydroxypyruvate reductase B OS=Pectobac... [more]
GHRB_SERP56.622e-1328.51Glyoxylate/hydroxypyruvate reductase B OS=Serratia... [more]
DHGY_HYPME6.622e-1328.18Glycerate dehydrogenase OS=Hyphomicrobium methylov... [more]

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Properties
Property NameValue
Genbank descriptionC32005A03EF RVDevelop1 Citrus clementina cDNA clone C32005A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920175 ID=FC920175; Name=FC920175; organism=Citrus clementina; type=EST; length=687bp
GGCTACTCTTAAGAAAACCATCAGGCTTCGCTATGTTAGGAGAACAGTTC
TTTACCTCAAACAAATTCCAATACTTGAAAGCATACGAATCAGCGCTTCC
TCTACACGAATTCTTGACACTACACGCGCACTCAGTGAAGGCCATCTTCT
CCAGCGCAGGTGCGCCGGTTACAGCCGAAATCCTCCGCCTGCTTCCAGAG
GTGCGGCTGGTGGTTGCCACAAGCGCCGGCCTTAACCATATTGACGTAGT
AGAGTGCCGCCGCCGCGGTGTGGCTCTGGCCAATGCTGGTAACGTTTTCT
CTGAAGACGTGGCTGATTACGCACTGGGCTTGCTAATTGATGTCCTGAGA
AAACTTTCTGCTGCCGATTGCTTTGTCAGACAAGGGCTTTGGCCTATCAA
CGCTGAATTTCCGCTTGGGTCTAAGTTGGGTGGCAAACGAGTTGGGATTG
TTGGGCTGGGGAGCATTGGGTCTGAAGTTGCCAAAAGGCTTGAAGCTTTC
GGCTGCTGCGTTTCATACAACTCTAGGAATAAAAAGCCTTCTGTTACGTA
CCCTTTCTATCCGGATGTCTGTGAACTTGCAGCTAACAGTGATGTCCTCA
TCATTTGCTGTGCATTGACTGATCAAACACATCACTTGATCAATAAGCAG
TCTTGTTGGCCCTGGGGAAAGAAGGAGTTATTATTAA
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