FC920176

Overview
NameFC920176
Unique NameFC920176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15502 contig Ccv1_Contig15502:3..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920176 vs. ExPASy Swiss-Prot
Match: OMT1_CHRAE (Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 76/173 (43.93%), Postives = 117/173 (67.63%), Query Frame = 1
Query:  163 MLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQLSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVCGVYGLASVCRYLLPNEDGVSLAPIFLLAREKVSVDPWYHLKDCLLEGTLPFMKAHNTKNPFEYAMKDARRRNLFKIIMSNHTALVMKKILK 681
            +  M+LA +S+LPM +K+ IEL +LEI+ +   + +S +EIAS LPT N +A  ++DR+LRLL+ YS +T ++ +  D  V   YGLA VC+YL  N+DGVS+A + L+ ++KV ++ WYHLKD +L+G +PF KA+   + FEY   D R   +F   MS+H+ + MKK+ +
Sbjct:    2 LFAMQLASASVLPMVLKSAIELDLLEII-RGQDTCMSPTEIASHLPTTNPDAPAMVDRILRLLSCYSVVTCSVRSVDDQRV---YGLAPVCKYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMSS-FEYHGTDPRFNKVFNRGMSDHSTITMKKVFQ 169          
BLAST of FC920176 vs. ExPASy Swiss-Prot
Match: OMT2_CHRAE (Quercetin 3-O-methyltransferase 2 OS=Chrysosplenium americanum GN=OMT2 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 76/173 (43.93%), Postives = 117/173 (67.63%), Query Frame = 1
Query:  163 MLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQLSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVCGVYGLASVCRYLLPNEDGVSLAPIFLLAREKVSVDPWYHLKDCLLEGTLPFMKAHNTKNPFEYAMKDARRRNLFKIIMSNHTALVMKKILK 681
            +  M+LA +S+LPM +K+ IEL +LEI+ +   + +S +EIAS LPT N +A  ++DR+LRLL+ YS +T ++ +  D  V   YGLA VC+YL  N+DGVS+A + L+ ++KV ++ WYHLKD +L+G +PF KA+   + FEY   D R   +F   MS+H+ + MKK+ +
Sbjct:    2 LFAMQLACASVLPMVLKSAIELDLLEII-RGQDTCMSPTEIASHLPTTNPDAPAMVDRILRLLSCYSVVTCSVRSVDDQRV---YGLAPVCKYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMSS-FEYHGTDPRFNKVFNRGMSDHSTITMKKVFQ 169          
BLAST of FC920176 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 78/183 (42.62%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  148 DEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKAS---PSQLSSSEIASQLPTNNQE---ASTVLDRMLRLLASYSFLTYNLVTNKDGNVCGVYGLASVCRYLLPNEDGVSLAPIFLLAREKVSVDPWYHLKDCLLEGTLPFMKAHNTKNPFEYAMKDARRRNLFKIIMSNHTALVMKKIL 678
            DEE  M  M+LA SS+LPMT+K  IELG+LE+L K +    + L+  E+ +++P    +   A+ ++DRMLRLLASY  +   +  ++DG     Y  A VC++L PNEDGVS+A + L+ ++KV ++ WY+LKD +L+G +PF KA+     FEY   DAR   +F   M NH+ ++ KK+L
Sbjct:   13 DEEACMYAMQLASSSILPMTLKNAIELGLLEVLQKEAGGGKAALAPEEVVARMPAAPSDPAAAAAMVDRMLRLLASYDVVRCQM-EDRDGRYERRYSAAPVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYG-MTAFEYHGTDARFNRVFNEGMKNHSVIITKKLL 193          
BLAST of FC920176 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32
Identity = 77/182 (42.31%), Postives = 117/182 (64.29%), Query Frame = 1
Query:  148 DEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASPS--QLSSSEIASQLPT--NNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVCGVYGLASVCRYLLPNEDGVSLAPIFLLAREKVSVDPWYHLKDCLLEGTLPFMKAHNTKNPFEYAMKDARRRNLFKIIMSNHTALVMKKILK 681
            DEE  M  M+LA +S+LPMT+K  +ELG+LE+L   +P+   L+  E+ ++LP    N +A+ ++DRMLRLLASY  +   +  +KDG     Y  A V ++L PNEDGVS+A + L+ ++KV ++ WY+LKD +L+G +PF KA+     FEY   D R   +F   M NH+ ++ KK+L+
Sbjct:   13 DEEACMYAMQLASASILPMTLKNALELGLLEVLQAEAPAGKALAPEEVVARLPVAPTNPDAADMVDRMLRLLASYDVVKCQM-EDKDGKYERRYSAAPVGKWLTPNEDGVSMAALTLMNQDKVLMESWYYLKDAVLDGGIPFNKAYG-MTAFEYHGTDPRFNRVFNEGMKNHSVIITKKLLE 192          
BLAST of FC920176 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30
Identity = 77/178 (43.26%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  148 DEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQ-LSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVCGVYGLASVCRYLLPNEDGVSLAPIFLLAREKVSVDPWYHLKDCLLEGTLPFMKAHNTKNPFEYAMKDARRRNLFKIIMSNHTALVMKKIL 678
            DE+   L + LA+++  PM +K+  EL +L+I +KA     +S+SEIASQ+   N  A  +LDRMLRLLAS+S LT  L   + G+   VYG A +C YL  N+   SL P+ +L  +KV ++ W+HL D +LEG +PF +AH     F+Y   D R  ++F   M++HT LVMKK+L
Sbjct:   18 DEQLAGLAVTLANAAAFPMILKSAFELKILDIFSKAGEGVFVSTSEIASQIGAKNPNAPVLLDRMLRLLASHSVLTCKLQKGEGGSQ-RVYGPAPLCNYLASNDGQGSLGPLLVLHHDKVMMESWFHLNDYILEGGVPFKRAHGMIQ-FDYTGTDERFNHVFNQGMAHHTILVMKKLL 193          
BLAST of FC920176 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 63/164 (38.41%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  196 LPMTMKAIIELGVLEILAKASP-SQLSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVCGVYGLASVCRYLLPNEDGVSLAPIFLLAREKVSVDPWYHLKDCLL-EGTLPFMKAHNTKNPFEYAMKDARRRNLFKIIMSNHTALVMKKILK 681
            LPM ++A IEL V EI+++A P +QLS S+I +++PT N  A+  LDR+LR+L + S L+ +  T K G V   YGL    R L+ +ED VS+ P+ L   +K  V+ +Y++KD +L EG +PF + H   + F+YA K+ R    F   M   + +   ++ K
Sbjct:   51 LPMALRAAIELNVFEIISQAGPDAQLSPSDIVAKIPTKNPSAAISLDRILRMLGASSILSVS--TTKSGRV---YGLNEESRCLVASEDKVSVVPMLLFTSDKAVVESFYNIKDVVLEEGVIPFDRTHG-MDFFQYAGKEERVNKSFNQAMGAGSTIAFDEVFK 208          
BLAST of FC920176 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = 1
Query:  172 MELAHSSLLPMTMKAIIELGVLEILAKASP--SQLSSSEIASQLPTNNQEASTV--LDRMLRLLASYSFLTYNLVTNKDGNVCGVYGLASVCRYLLPNEDGVSLAPIFLLAREKVSVDPWYHLKDCLLEGTLPFMKAHNTKNPFEYAMKDARRRNLFKIIMSNHTALVMKKILK 681
            M L  + + P  + A I+L + EI+AKA+P  + +S SEIAS+LP + Q +     LDRMLRLLASYS LT    T +DG    VYGL+ V +YL+P+E    LA           +  W + K+ +++  +   K  +    +E+  KD +   +F   M +  A  MK++L+
Sbjct:   29 MVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE 202          
The following BLAST results are available for this feature:
BLAST of FC920176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
OMT1_CHRAE1.503e-3343.93Quercetin 3-O-methyltransferase 1 OS=Chrysospleniu... [more]
OMT2_CHRAE2.563e-3343.93Quercetin 3-O-methyltransferase 2 OS=Chrysospleniu... [more]
COMT1_MAIZE1.662e-3242.62Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
COMT1_SACOF4.834e-3242.31Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
IMT1_MESCR1.555e-3043.26Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
SMT_COPJA1.320e-2138.41(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
CHOMT_MEDSA1.046e-1835.06Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]

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Properties
Property NameValue
Genbank descriptionC32005A04EF RVDevelop1 Citrus clementina cDNA clone C32005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920176 ID=FC920176; Name=FC920176; organism=Citrus clementina; type=EST; length=682bp
ATAACTAATATATCTATACGTGTATCTATATAGTTATATACTGAGCGCTC
ATCAACATCATCCATTGCCATTTTGTTAATTTCAGCATATCCTACTCCGA
GAATTAAGATGAGTTCATTCCATGACCAACTCATGAAACCACCAAACGAT
GAGGAAGATTTCATGCTGATCATGGAGCTTGCCCACAGCTCATTACTTCC
GATGACCATGAAAGCTATCATCGAGCTTGGTGTGTTAGAGATTTTAGCTA
AAGCTAGTCCATCTCAGCTTTCTTCTTCTGAGATTGCATCTCAGCTGCCC
ACAAATAACCAAGAAGCCTCAACAGTGCTTGATCGAATGTTACGACTCCT
TGCTAGTTACTCTTTCCTAACATATAATCTTGTCACAAATAAAGATGGAA
ATGTTTGCGGAGTATATGGTTTAGCGTCCGTTTGCAGATATTTGCTTCCA
AATGAAGACGGAGTTTCTCTTGCTCCCATTTTCCTCTTAGCTCGGGAGAA
AGTTTCTGTAGATCCTTGGTACCACTTGAAAGATTGTTTATTGGAAGGGA
CCCTACCTTTTATGAAGGCACATAATACAAAAAATCCATTTGAGTATGCT
ATGAAAGATGCTAGAAGACGGAACCTCTTCAAAATCATCATGAGCAATCA
TACGGCTTTAGTTATGAAGAAAATCTTGAAAT
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