FC920182

Overview
NameFC920182
Unique NameFC920182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_STRP1 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=gap PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.365e-11
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF 386
            VK+GINGFGRIGRL  R I   + VE+  +ND     + + ++ KYD+  G++    ++VK+    + G   + V   R+PE I WA  G E V+E+TG F
Sbjct:    3 VKVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRF-DGTVEVKEGGFEVNGNF-IKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_STREQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equisimilis GN=gap PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.365e-11
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF 386
            VK+GINGFGRIGRL  R I   + VE+  +ND     + + ++ KYD+  G++    ++VK+    + G   + V   R+PE I WA  G E V+E+TG F
Sbjct:    3 VKVGINGFGRIGRLAFRRIQNVEGVEVTRIND-LTDPNMLAHLLKYDTTQGRF-DGTVEVKEGGFEVNGNF-IKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: E4PD_SALAR (D-erythrose-4-phosphate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.701e-11
Identity = 45/148 (30.41%), Postives = 78/148 (52.70%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 509
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   +   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+++ + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHEQTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAE 146          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: E4PD_VIBFM (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=epd PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP------VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP--SKDAPMFVVGVNEHEYKPE 509
            +++ INGFGRIGR V R + +   RD +E+VAVN+     + M ++F+YDS HG+++H   KV  D+  L+ + P      V +    +   +PW     + +++ TGV+                V+ S P  S      + GVN     PE
Sbjct:    2 LRVAINGFGRIGRSVLRALYESDKRDKIEVVAVNE-LSQPEAMAHLFQYDSTHGRFQH---KVTHDQEYLYIDLPNGSQDKVRILHQADLSLLPWQSLEVDLILDCTGVYGSKADGEKHINAGAKKVLFSHPGGSDLDNTIIYGVNHDTLLPE 150          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: E4PD_SHELP (D-erythrose-4-phosphate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=epd PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 42/148 (28.38%), Postives = 73/148 (49.32%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK---DAPMFVVGVNEHEYKPE 509
            +K+ ING+GRIGR + R + +   RD +++VA+N+     + M ++ +YD+ HG+++       D   +  G+  + +    + E++PW     + V E+TG                  V+IS PS    DA + V GVN  + K E
Sbjct:    2 IKVAINGYGRIGRSILRALYESGKRDQIQIVAINE-LANPEAMLHLTQYDTTHGRFQ--SPASLDANVMTIGDDRIQLLHEADAEKLPWRSLDIDIVFEATGALIDRQACEAHIRAGAKQVLISHPSSGDVDATI-VYGVNHQDLKAE 145          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: E4PD_SHEFN (D-erythrose-4-phosphate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=epd PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 42/147 (28.57%), Postives = 74/147 (50.34%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD--APMFVVGVNEHEYKPE 509
            +++ ING+GRIGR + R + +   R  +++VA+N+     + + ++ +YD+ HG++K H +K+  D+ LL G+  + +    +   +PWAE   + V E+TG                  V+IS PS        V GVN    + E
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINE-LAKPEAICHLTQYDTTHGRFK-HTVKLNGDQ-LLIGDDSILLLNQPDANLLPWAELDIDIVYEATGSLIDRQACEAHIHAGAKQVLISHPSSADVDETIVYGVNHDLLRAE 145          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: E4PD_PSEA6 (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=epd PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 41/146 (28.08%), Postives = 74/146 (50.68%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVIL---QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS---APSKDAPMFVVGVNEHEYK 503
            +++ INGFGR+GR V R +    Q   +++VA+N+     + + ++ KYD+ HG+++     V D++ L+     +T+    N  ++PWA+   + V+E TGV                 V+ S    P  DA + ++G+NE   K
Sbjct:    2 IRVAINGFGRVGRNVLRALYETGQNKQIQIVAINE-LAEPEGVAHLLKYDTAHGRFRFPV--VLDNQQLVVAGDHITLLQQENIRDLPWAQLDIDVVLECTGVNNERVHGEQHIAQGAKKVLFSQPCGPDVDATI-IMGINEESLK 143          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 43/141 (30.50%), Postives = 77/141 (54.61%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQ--RD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM---FVVGVN 488
            +KI ING+GRIGR V R + +  RD ++++VA+N+     + M ++ ++D+ HG++++         ++L GE  +++F  ++P  +PW   G + V++ TGVF                V+ S P+ DA +    V GVN
Sbjct:    2 IKIAINGYGRIGRNVLRALYESGRDKNIKIVAINE-LAAPEAMVHLTRFDTSHGRFRYPVQLA--GHSMLVGEDLISLFAEQDPANLPWRALGVDVVLDCTGVFGSRADAELHLGAGAGKVLFSHPA-DADVDATIVYGVN 138          
The following BLAST results are available for this feature:
BLAST of FC920182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P_STRP14.365e-1139.60Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STREQ4.365e-1139.60Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
E4PD_SALAR5.701e-1130.41D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_VIBFM7.446e-1130.07D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_SHELP7.446e-1128.38D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEFN9.725e-1128.57D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_PSEA69.725e-1128.08D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
E4PD_AERS49.725e-1130.50D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]

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Properties
Property NameValue
Genbank descriptionC32005A10EF RVDevelop1 Citrus clementina cDNA clone C32005A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920182 ID=FC920182; Name=FC920182; organism=Citrus clementina; type=EST; length=512bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTAC
AAACCAGAGCTC
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