FC920184

Overview
NameFC920184
Unique NameFC920184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9464 contig Ccv1_Contig9464:16..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920184 vs. ExPASy Swiss-Prot
Match: ECHM_MOUSE (Enoyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 44/133 (33.08%), Postives = 65/133 (48.87%), Query Frame = 1
Query:  286 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLSKIXGKSVA 684
            NAL   ++  L  A ET  +D +   +++     K F AGAD+KE +  +  +   Y +   S +  +  +  P IA ++             CD+   GE A  G PE  L  IPGAGGTQRL++  GKS+A
Sbjct:   59 NALCNGLIEELNQALETFEQDPAVGAIVLTGG-DKAFAAGADIKEMQNRTFQDC--YSSKFLSHWDHITRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA 188          
BLAST of FC920184 vs. ExPASy Swiss-Prot
Match: ECHM_DICDI (Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=echs1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 46/133 (34.59%), Postives = 65/133 (48.87%), Query Frame = 1
Query:  286 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLSKIXGKSVA 684
            NAL   ++  +  A +   ED     ++I  S  K F AGAD+KE  +++  +   Y N L + +  L  +  P IA ++             CD+ I GE A+ G PE  L  IPG GGTQRL +  GKS A
Sbjct:   46 NALSDGLISEINSAVKLFQEDKDVGSIIITGS-EKAFAAGADIKEMEKVTLPDA--YNNDLLAQWHDLTKIRKPIIAAVNGYALGGGCELAMMCDIIIAGEKAVFGQPEIKLGTIPGCGGTQRLIRAIGKSKA 175          
BLAST of FC920184 vs. ExPASy Swiss-Prot
Match: FADJ_PECCP (Fatty acid oxidation complex subunit alpha OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  286 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLSKIXG 672
            N L ++  + +   FE   + ++   +++ SS P  F AGAD+    Q  S  +        + TF  + ALP P +A I              CD R+C   E  +LGLPE  L ++PG+GGTQRL ++ G
Sbjct:   39 NTLKSEFAQQILSVFEQARQHATLRGLILISSKPDSFIAGADITMLNQCRSAEQAENLAKQGQETFEQIAALPFPVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIG 170          
BLAST of FC920184 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCLE (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium leprae GN=echA8 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 43/133 (32.33%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  286 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLSKIXGKSVA 684
            NAL + M+  + +A + +  D     ++I  S PKVF AGAD+KE   ++ ++   +     S +  L A+  P IA +              CDL I  + A  G PE  L ++PG GG+QRL++  GK+ A
Sbjct:   26 NALNSQMMNEITNAAKELDIDPDVGAILITGS-PKVFAAGADIKEMASLTFTDA--FDADFFSAWGKLAAVRTPMIAAVAGYALGGGCELAMMCDLLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA 155          
BLAST of FC920184 vs. ExPASy Swiss-Prot
Match: FADB_SHEPA (Fatty acid oxidation complex subunit alpha OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fadB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 45/132 (34.09%), Postives = 63/132 (47.73%), Query Frame = 1
Query:  286 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLSKIXG 672
            N    + +  L  A ++I +DSS   +M+ SS    F  GAD+ E   +   E   +  ++      F+ LE LP PTI+ I+              D RI    A +GLPET L IIPG GGT RL ++ G
Sbjct:   29 NKFDRETIDSLNAALDSIKQDSSIKALML-SSAKDAFVVGADITEFLGLFAEEDTVLQSWLEQANVVFNKLEDLPFPTISAINGFALGAGCETILATDFRIADTTARIGLPETKLGIIPGFGGTVRLPRVIG 159          
BLAST of FC920184 vs. ExPASy Swiss-Prot
Match: FADB_ERWCT (Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=fadB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 45/136 (33.09%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  286 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLSKIXGKSVA 684
            N L T  +  L  A + ++E  +   +++RS  P  F  GAD+ E   +  +P+E +H ++    S F+ LE LP+PT++ I+              D R+    A +GLPET L I+PG GGT RL ++ G   A
Sbjct:   29 NTLDTRTVASLGKALDVLAEQPNLKGLLLRSDKP-AFIVGADITEFLSLFAAPAEKLHEWLVFANSIFNRLEDLPVPTLSAINSYALGGGCECVLATDFRLATPDARIGLPETKLGIMPGFGGTVRLPRLLGADSA 163          
BLAST of FC920184 vs. ExPASy Swiss-Prot
Match: ECHM_BOVIN (Enoyl-CoA hydratase, mitochondrial OS=Bos taurus GN=ECHS1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 44/133 (33.08%), Postives = 64/133 (48.12%), Query Frame = 1
Query:  286 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLSKIXGKSVA 684
            NAL   ++  L  A +   ED +   +++     KVF AGAD+KE + ++      Y     S +  L  +  P IA ++             CD+   GE A  G PE  +  IPGAGGTQRL++  GKS+A
Sbjct:   59 NALCNGLIVELNQALQAFEEDPAVGAIVLTGG-EKVFAAGADIKEMQSLTFQNC--YSGGFLSHWDQLTRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGGTQRLTRAVGKSLA 188          
BLAST of FC920184 vs. ExPASy Swiss-Prot
Match: ECHM_HUMAN (Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 43/133 (32.33%), Postives = 64/133 (48.12%), Query Frame = 1
Query:  286 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLSKIXGKSVA 684
            NAL   ++  L  A +T  ED +   +++     K F AGAD+KE + +S  +   Y +     +  L  +  P IA ++             CD+   GE A    PE  +  IPGAGGTQRL++  GKS+A
Sbjct:   59 NALCDGLIDELNQALKTFEEDPAVGAIVLTGG-DKAFAAGADIKEMQNLSFQDC--YSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLA 188          
BLAST of FC920184 vs. ExPASy Swiss-Prot
Match: FADJ_ERWCT (Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=fadJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 41/132 (31.06%), Postives = 63/132 (47.73%), Query Frame = 1
Query:  286 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLSKIXG 672
            N L ++    +   FE   + ++   ++  S+ P  F AGAD+    + S +E         + TF  + ALP P +A I              CD R+C   E  +LGLPE  L ++PG+GGTQRL ++ G
Sbjct:   43 NTLKSEFAEQILSVFELARQHATLRGLIFISAKPDSFIAGADITMLNKCSSAEQAENLAKQGQETFDQIAALPFPVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIG 174          
BLAST of FC920184 vs. ExPASy Swiss-Prot
Match: FADB_YERE8 (Fatty acid oxidation complex subunit alpha OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 43/136 (31.62%), Postives = 65/136 (47.79%), Query Frame = 1
Query:  286 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLSKIXGKSVA 684
            N L T  +  L  A   + + S    +++RS+    F  GAD+ E   +    P ++H ++      F+ LE LP+PTIA I+              D R+    A +GLPET L I+PG GG+ RL ++ G   A
Sbjct:   29 NKLDTQTVANLGEALVVLEKQSELKGLLLRSA-KAAFIVGADITEFLSLFNEPPEKLHQWLVFANDIFNRLEDLPVPTIAAINGYALGGGCECILATDFRVASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSA 163          
The following BLAST results are available for this feature:
BLAST of FC920184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ECHM_MOUSE1.927e-1233.08Enoyl-CoA hydratase, mitochondrial OS=Mus musculus... [more]
ECHM_DICDI1.927e-1234.59Probable enoyl-CoA hydratase, mitochondrial OS=Dic... [more]
FADJ_PECCP7.321e-1231.82Fatty acid oxidation complex subunit alpha OS=Pect... [more]
ECHA8_MYCLE7.321e-1232.33Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]
FADB_SHEPA9.562e-1234.09Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_ERWCT1.249e-1133.09Fatty acid oxidation complex subunit alpha OS=Erwi... [more]
ECHM_BOVIN1.249e-1133.08Enoyl-CoA hydratase, mitochondrial OS=Bos taurus G... [more]
ECHM_HUMAN1.631e-1132.33Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens... [more]
FADJ_ERWCT3.633e-1131.06Fatty acid oxidation complex subunit alpha OS=Erwi... [more]
FADB_YERE83.633e-1131.62Fatty acid oxidation complex subunit alpha OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionC32005A12EF RVDevelop1 Citrus clementina cDNA clone C32005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920184 ID=FC920184; Name=FC920184; organism=Citrus clementina; type=EST; length=685bp
ATCAATTTTTCGTCACAATGAGTGCTTTAACGAAGCTAACGAAAACACTT
GCACATCACTGCGTCAAAAAATCTAAAACCCATTGGTGCAAACCTGCGCA
GCCACTTTTAAATTTATTAATCTCTGAAAATATTGTTAACATCAACACTT
CTCAGTTTCATCAGTACCAAAGCCGTAGAACTCTCATTCTAGATTCCGCT
TCCTCCGAATCTGTCCAGCTTCAGCGAATCTCCGATTCTGATATCGGAAT
AATTGAGGTTAGTTTAAACAGACCTGCGGCAAAAAAATGCGCTTGGAACG
GATATGTTGAGAGGCTTAAAGCATGCATTTGAAACTATCAGTGAGGATTC
CTCTGCTAATGTTGTCATGATACGTAGCTCGGTTCCTAAAGTGTTCTGTG
CTGGAGCTGATTTGAAGGAACGCAGGCAAATGAGTCCATCTGAGATTCAT
TTTTATGTCAACACATTGCGATCTACATTCTCCTTCTTAGAGGCACTTCC
TATTCCAACCATTGCTGTTATTGATGGAGCAGCATTGGGTGGTGGACTTG
AAATGGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTG
GGCTTGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACA
GCGGCTTTCAAAGATAGNTGGAAAATCAGTAGCAA
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