FC920186

Overview
NameFC920186
Unique NameFC920186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12599 contig Ccv1_Contig12599:46..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27
Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L+NYMD +YFG IGIGTPPQ FTVIFDTGSSNLWVPS  C  S AC  H+++   +SSTY+   +   + YGTG+++G    D V++G +   +Q F  +  EP      A FDGILGL +
Sbjct:   66 LENYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYC-SSPACSNHNRFNPQQSSTYQGTNQKLSVAYGTGSMTGILGYDTVQVGGITDTNQIFGLSETEPGSFLYYAPFDGILGLAY 185          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CHYM_CALJA (Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27
Identity = 60/121 (49.59%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L NY+D QYFG+I IGTPPQ FTV+FDTGSS+LWVPS  C  S+AC  H ++   +SST++   KS  I YGTG++ G    D V +  +V   Q    +T+EP   F  ++FDGILGL +
Sbjct:   66 LTNYLDCQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSVYCN-SVACQNHHRFDPSKSSTFQNMDKSLSIQYGTGSMQGLLGYDTVTVSSIVDPHQTVGLSTQEPGDVFTYSEFDGILGLAY 185          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27
Identity = 73/131 (55.73%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  272 ESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQ 664
            +SG A +VAL N  D  Y+GEIGIGTPPQ FTVIFDTGSS LWVPSSK         HS Y S  SSTYK                   S+D V IGDLVVK+Q+FIEAT E    FL   FDGILGL FQ
Sbjct:    2 DSGSA-VVALTNDRDTSYYGEIGIGTPPQKFTVIFDTGSSVLWVPSSKA--------HSMYESSGSSTYK-------------------SQDSVTIGDLVVKEQDFIEATEEADNVFLNRLFDGILGLSFQ 104          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CHYM_SHEEP (Chymosin OS=Ovis aries GN=CYM PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  242 RKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            ++Y +       G+   V L NY+D+QYFG+I +GTPPQ FTV+FDTGSS+ WVPS  C  S AC  H ++   +SST++  GK   I YGTG++ G    D V + ++V   Q    +T+EP   F  A+FDGILG+ +
Sbjct:   47 QQYGVSSEYSGFGEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSSTFQNLGKPLSIRYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAY 185          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPC_MONDO (Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 57/121 (47.11%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            + NY+D+ YFGEI IGTPPQNF V+FDTGSSNLWVPS+ C  S AC  H+++   +SST+   G++  + YG+G+++     D V + ++VV +QEF  +  EP+  F  + FDGILG+ +
Sbjct:   67 ITNYLDSFYFGEISIGTPPQNFLVLFDTGSSNLWVPSTYCQ-SQACSNHNRFSPSQSSTFTNGGQTYTLSYGSGSLTVVLGYDTVTVQNIVVSNQEFGLSESEPTSPFYYSDFDGILGMAY 186          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA_HUMAN (Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.386e-26
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L+NY+D +YFG IGIGTP Q+FTV+FDTGSSNLWVPS  C  S+AC  H+++    SSTY+   ++  I YGTG+++G    D V++G +   +Q F  +  EP      A FDGILGL +
Sbjct:   68 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYC-SSLACTNHNRFNPEDSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 187          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.386e-26
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 2
Query:  281 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGD----LVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            DA    L +Y +AQY+G + IGTPPQNF V+FDTGSSNLWVP + C F  IAC  H+++   +SS+    G S +I YGTG++ G    D V  G        K+Q    AT EP +TF+ AKFDGI G+G+
Sbjct:   55 DAFNEGLSDYSNAQYYGPVTIGTPPQNFQVLFDTGSSNLWVPCANCPFGDIACRMHNRFDCKKSSSCTATGASFEIQYGTGSMKGTVDNDVVCFGHDTTYCTDKNQGLACATSEPGITFVAAKFDGIFGMGW 186          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 70/166 (42.17%), Postives = 90/166 (54.22%), Query Frame = 2
Query:  239 IRKYSLRGNLGESGDA-------------------------DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            +RK SLR NL E G                           D   L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS  C  S+AC  H+++    SSTY+    +  I YGTG+++G    D V++G +   +Q F  +  EP      A FDGILGL +
Sbjct:   23 VRKKSLRRNLSEHGLLKDFLKKHNFNPASKYFPQAEAPTLIDEQPLENYLDMEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACTNHNRFNPQDSSTYQSTSGTVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 187          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 55/126 (43.65%), Postives = 83/126 (65.87%), Query Frame = 2
Query:  305 NYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQRFLFES 682
            NY+D+ YFGEI IGTPPQNF ++FDTGSSNLWVPS+ C  S AC  H+++   RSSTY+ + ++  + YG G+++     D V + ++V+ +Q F  +  EP+  F  + FDGILG+ +     ++
Sbjct:   68 NYLDSYYFGEISIGTPPQNFLILFDTGSSNLWVPSTYCQ-SQACSNHNRFNPSRSSTYQSSEQTYTLAYGFGSLTVLLGYDTVTVQNIVIHNQLFGMSENEPNYPFYYSYFDGILGMAYSNLAVDN 192          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 70/164 (42.68%), Postives = 94/164 (57.32%), Query Frame = 2
Query:  239 IRKYSLRGNLGESGD--------------------ADIVA---LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            ++K SLR NL E+G                     A +V+   L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS  C  S AC  H+++    SSTY+   ++  I YGTG+++G    D V++G +   +Q F  +  EP      A FDGILGL +
Sbjct:    9 VKKKSLRQNLIENGKLKEFMRTHKYNLGSKYIREAATLVSEQPLQNYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSIYC-SSEACTNHNRFNPQDSSTYEATSETLSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 171          
The following BLAST results are available for this feature:
BLAST of FC920186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PEPA_RHIFE2.793e-2750.41Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
CHYM_CALJA2.793e-2749.59Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1[more]
CARDF_CYNCA2.793e-2755.73Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CHYM_SHEEP3.648e-2743.57Chymosin OS=Ovis aries GN=CYM PE=2 SV=1[more]
PEPC_MONDO8.127e-2747.11Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV... [more]
PEPA_HUMAN1.386e-2648.76Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1[more]
ASP3_CAEEL1.386e-2647.73Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
PEPA2_MACFU1.811e-2642.17Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1[more]
PEPB_CANFA4.033e-2643.65Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]
PEPA_BOVIN4.033e-2642.68Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32005B02EF RVDevelop1 Citrus clementina cDNA clone C32005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920186 ID=FC920186; Name=FC920186; organism=Citrus clementina; type=EST; length=690bp
GTCTGCTCCAAGCATTTCTCTGTCTCGATCATCGAAAGAGACTTTACTTG
TCAACATGGGAACGGTATTCAAATCTATTACAGCCGGTTTCTTCCTTTGT
TTGCTTCTGTTTCCTGTGGTGTTCTCGACACCAAACGGTGGGTTATACAG
AATCGGACTTAAAAAGAGGAAGTTTGACCTGAACAACAGAGTGGCTGCCC
GCCTTGACTCCAAGGAAGGAGAGTCATTCAGAACTTCTATCAGAAAATAT
TCTCTTCGTGGAAACTTAGGAGAGTCAGGGGATGCTGATATTGTTGCGCT
GAAGAACTACATGGATGCTCAGTACTTTGGTGAGATTGGTATTGGCACAC
CCCCGCAAAATTTCACTGTGATATTTGACACTGGTAGTTCAAATTTGTGG
GTGCCCTCTTCTAAGTGTTATTTCTCGATTGCATGCTATTTCCATTCCAA
GTACAGGTCAGGCCGCTCAAGTACCTACAAGAAGAATGGTAAATCGGCTG
ATATCCATTATGGAACTGGAGCTATTTCTGGTTTTTTTAGCGAAGACCAT
GTCAAAATCGGTGATCTTGTGGTCAAAGATCAGGAATTTATTGAGGCAAC
TAGGGAGCCCAGCCTCACTTTCTTGCTGGCCAAGTTTGATGGCATACTTG
GACTTGGCTTCCAGAGATTTCTGTTTGAAAGCTGTGCCCG
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