FC920186

Overview
NameFC920186
Unique NameFC920186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12599 contig Ccv1_Contig12599:46..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS  C  S+AC  H+++    SST++   +   I YGTG+++G    D V++G +   +Q F  +  EP      A FDGILGL +
Sbjct:   65 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 184          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 70/166 (42.17%), Postives = 89/166 (53.61%), Query Frame = 2
Query:  239 IRKYSLRGNLGESGDA-------------------------DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            +RK SLR NL E G                           D   L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS  C  S+AC  H+ +    SSTY+    +  I YGTG+++G    D V++G +   +Q F  +  EP      A FDGILGL +
Sbjct:   23 VRKKSLRRNLSEHGLLKDFLKKHNRNPASKYFPQTEAPTLIDEQPLENYLDVEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACTNHNLFNPQDSSTYQSTSGTLSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 187          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 70/166 (42.17%), Postives = 89/166 (53.61%), Query Frame = 2
Query:  239 IRKYSLRGNLGESGDA-------------------------DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            +RK SLR NL E G                           D   L+NY+D +YFG IGIGTP Q+FTVIFDTGSSNLWVPS  C  S+AC  H+ +    SSTY+    +  I YGTG+++G    D V++G +   +Q F  +  EP      A FDGILGL +
Sbjct:   23 VRKKSLRRNLSEHGLLKDFLKKHNLNPASKYFPQAEAPTLIDEQPLENYLDVEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACTNHNLFNPQDSSTYQSTSGTLSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 187          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 59/121 (48.76%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L NYMD +YFG IGIGTPPQ FTVIFDTGSSNLWVPS  C  S AC  H+++   +SST++   ++  I YGTG+++G    D V++  +   +Q F  +  EP      + FDGILGL +
Sbjct:   67 LVNYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYC-SSPACSNHNRFNPQKSSTFQSTSQTLSIAYGTGSMTGVLGYDTVQVAGIADTNQIFGLSQTEPGSFLYYSPFDGILGLAY 186          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PAG2_PIG (Pregnancy-associated glycoprotein 2 OS=Sus scrofa GN=PAG2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 60/121 (49.59%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L+NY+D  Y G I IGTPPQ F+V+FDTGSS+LWVPS  C  S AC  H  +    SST+   GKS  + YG+G +SGF  +D V+IG L    Q F  +  E    F  A FDGILGL +
Sbjct:   68 LRNYLDMVYVGNISIGTPPQQFSVVFDTGSSDLWVPSIYCK-SKACVTHRSFNPSHSSTFHDRGKSIKLEYGSGKMSGFLGQDTVRIGQLTSTGQAFGLSKEETGKAFEHAIFDGILGLAY 187          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA_CHICK (Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.986e-26
Identity = 60/121 (49.59%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            + NYMDA Y+G I IGTP Q+F+VIFDTGSSNLWVPS  C  S AC  H ++   +SSTY    ++  I YGTG++SG    D V +  + V++Q F  +  EP   F    FDGILGL F
Sbjct:   51 MTNYMDASYYGTISIGTPQQDFSVIFDTGSSNLWVPSIYCK-SSACSNHKRFDPSKSSTYVSTNETVYIAYGTGSMSGILGYDTVAVSSIDVQNQIFGLSETEPGSFFYYCNFDGILGLAF 170          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEP2B_GADMO (Pepsin-2B OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            +KN  D +Y+G I IGTPP++F VIFDTGSSNLWV SS C    AC  H+K++  +SSTY + GK+ D+ YGTG + G   +D V +G     +QE  E+  EP      A FDGILGL +
Sbjct:    6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQ-ACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAY 125          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L NY+D +YFG IGIGTP Q FTVIFDTGSSNLWVPS  C  S AC  H+++    SSTY+   ++  I YGTG+++G    D V++G +   +Q F  +  EP      + FDGILGL +
Sbjct:   67 LVNYLDMEYFGTIGIGTPAQEFTVIFDTGSSNLWVPSIYC-SSPACTNHNRFNPQESSTYQATSQTLSIAYGTGSMTGILGYDTVQVGGIADTNQIFGLSETEPGSFLYYSPFDGILGLAY 186          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PAG_HORSE (Pregnancy-associated glycoprotein OS=Equus caballus GN=PAG PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  200 RLDSKEGESFRTSIRKYSLRGN---LGESGDADIV--ALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            R + +E +  +  + KY  R     L +  D+ +    ++NY+D  Y G I +GTPPQ F VIFDTGS++LWVPS  C  S AC  H+ +   RSST+  +G+   + YGTG +SGF   D +KI  LV ++Q F  +  EP     LA FDGILGL +
Sbjct:   28 RENLREKDMLKEYLEKYPFRLTHKLLHKHADSGVAFEPMRNYLDIAYMGIISVGTPPQEFQVIFDTGSADLWVPSIYCS-SPACSNHNTFNPLRSSTFVASGQPIKLIYGTGKMSGFVGYDTIKISSLVDRNQAFGLSVEEPDKILELATFDGILGLSY 185          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPA_SORUN (Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.002e-25
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L NYMD +YFG I IGTPPQ FTVIFDTGSSNLWVPS  C  S AC  H+++   +SST+K   ++  I YGTG+++G    D V++  +   +Q F  +  EP      + FDGILGL +
Sbjct:   67 LVNYMDMEYFGTISIGTPPQEFTVIFDTGSSNLWVPSIYC-SSPACSNHNRFDPQKSSTFKPTSQTVSIAYGTGSMTGVLGYDTVQVAGIADTNQIFGLSQSEPGSFLYYSPFDGILGLAY 186          
The following BLAST results are available for this feature:
BLAST of FC920186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PEPA_PIG5.268e-2648.76Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
PEPA_MACMU5.268e-2642.17Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA1_MACFU5.268e-2642.17Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
PEPA_SUNMU6.880e-2648.76Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]
PAG2_PIG6.880e-2649.59Pregnancy-associated glycoprotein 2 OS=Sus scrofa ... [more]
PEPA_CHICK8.986e-2649.59Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1[more]
PEP2B_GADMO1.174e-2548.76Pepsin-2B OS=Gadus morhua PE=1 SV=1[more]
PEPA_CALJA1.533e-2548.76Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
PAG_HORSE1.533e-2541.51Pregnancy-associated glycoprotein OS=Equus caballu... [more]
PEPA_SORUN2.002e-2548.76Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32005B02EF RVDevelop1 Citrus clementina cDNA clone C32005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920186 ID=FC920186; Name=FC920186; organism=Citrus clementina; type=EST; length=690bp
GTCTGCTCCAAGCATTTCTCTGTCTCGATCATCGAAAGAGACTTTACTTG
TCAACATGGGAACGGTATTCAAATCTATTACAGCCGGTTTCTTCCTTTGT
TTGCTTCTGTTTCCTGTGGTGTTCTCGACACCAAACGGTGGGTTATACAG
AATCGGACTTAAAAAGAGGAAGTTTGACCTGAACAACAGAGTGGCTGCCC
GCCTTGACTCCAAGGAAGGAGAGTCATTCAGAACTTCTATCAGAAAATAT
TCTCTTCGTGGAAACTTAGGAGAGTCAGGGGATGCTGATATTGTTGCGCT
GAAGAACTACATGGATGCTCAGTACTTTGGTGAGATTGGTATTGGCACAC
CCCCGCAAAATTTCACTGTGATATTTGACACTGGTAGTTCAAATTTGTGG
GTGCCCTCTTCTAAGTGTTATTTCTCGATTGCATGCTATTTCCATTCCAA
GTACAGGTCAGGCCGCTCAAGTACCTACAAGAAGAATGGTAAATCGGCTG
ATATCCATTATGGAACTGGAGCTATTTCTGGTTTTTTTAGCGAAGACCAT
GTCAAAATCGGTGATCTTGTGGTCAAAGATCAGGAATTTATTGAGGCAAC
TAGGGAGCCCAGCCTCACTTTCTTGCTGGCCAAGTTTGATGGCATACTTG
GACTTGGCTTCCAGAGATTTCTGTTTGAAAGCTGTGCCCG
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