FC920186

Overview
NameFC920186
Unique NameFC920186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12599 contig Ccv1_Contig12599:46..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP1_RHINI (Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 52/130 (40.00%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  275 SGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            SG   +V  +N  D +Y+GE+ +GTP     + FDTGSS++W  S+ C  S     H+KY   +SSTY  +G++  I YG G + SG  + D+V +G L++K Q  IE  +  S  F     DG+LGLGF
Sbjct:   68 SGSVPMVDYEN--DVEYYGEVTVGTPGIKLKLDFDTGSSDMWFASTLC--SSCSNSHTKYDPKKSSTYAADGRTWSISYGDGSSASGILATDNVNLGGLLIKKQT-IELAKRESSAFATDVIDGLLGLGF 192          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP4_RHINI (Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 57/167 (34.13%), Postives = 84/167 (50.30%), Query Frame = 2
Query:  164 KRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            KR  +  N   AR  S    S  +S       G+ G      +    +  D +Y+GE+ +GTP     + FDTGSS+LW  S+ C  +      +KY   +SSTY K+G++  I YG G + SG   +D V +G L +K+Q  IE  +  + +F     DG+LGLGF
Sbjct:   43 KRAIEKANAKYARFRSSSSSSSSSSC------GSAGTESSGSVPVTDDGNDIEYYGEVTVGTPGIKLKLDFDTGSSDLWFASTLC--TNCGSSQTKYDPSQSSTYAKDGRTWSISYGDGSSASGILGKDTVNLGGLKIKNQ-IIELAKREASSFSSGPSDGLLGLGF 200          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP_RHICH (Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  314 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            D +Y+G++ IGTP + F + FDTGSS+LW+ S+ C  +      +KY   +SSTY+ +G++  I YG G + SG  ++D+V +G L++K Q  IE  +  + +F     DG+LGLGF
Sbjct:   82 DVEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSRQTKYDPKQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFANGPNDGLLGLGF 195          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: ASP6_CAEEL (Aspartic protease 6 OS=Caenorhabditis elegans GN=asp-6 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 54/126 (42.86%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIG-----DLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            + ++ D +Y G I IGTP Q F V+ DTGSSNLW+P   C     C   SK+ S  SST+ KNGKS  I YG+G  +G   +D V+ G      L V    F  A++  S  F     DGILGL F
Sbjct:   63 VNDFGDFEYLGNITIGTPDQGFIVVLDTGSSNLWIPGPTC--KTNCKTKSKFDSTASSTFVKNGKSWTIQYGSGDAAGILGQDTVRFGAKGDSQLSVPTTTFGIASK-ISADFKNDATDGILGLAF 185          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP5_RHINI (Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 61/180 (33.89%), Postives = 84/180 (46.67%), Query Frame = 2
Query:  125 STPNGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            + PNG    I L K K    N  A     K    +       S   +    G   +     Y D +YFG++ +GTP     + FDTGSS+LW  SS C  +   Y  +KY   +S TY K+G++  I YG G + SG    D V +G L ++ Q  IE  R  + +F     DG+LGLGF
Sbjct:   21 AAPNGKKVNIPLTKNKDYKPN--AKNAIQKVLAKYHRHRSTSSSSNSTSTDGIGRVPVTDYYNDIEYFGQVKVGTPGVTLKLDFDTGSSDLWFASSLC--TNCGYSQTKYNPNQSRTYAKDGRAWSISYGDGSSASGILGTDTVVLGGLTIQRQT-IELARREASSFQNGPSDGLLGLGF 195          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP_SYNRA (Syncephapepsin OS=Syncephalastrum racemosum GN=SPSR PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 52/117 (44.44%), Postives = 70/117 (59.83%), Query Frame = 2
Query:  314 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            D +Y+  + +GTP Q+  + FDTGSS+LW  S+ C    +C   S +   +SSTYKK GKS  I YG G + SG  + D+V++G L +  Q    ATRE S +F     DGILGLGF
Sbjct:   86 DVEYYATVSVGTPAQSIKLDFDTGSSDLWFSSTLC---TSCGSKS-FDPTKSSTYKKVGKSWQISYGDGSSASGITATDNVELGGLKITGQTIELATRESS-SFSSGAIDGILGLGF 197          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP3_RHINI (Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 2
Query:  242 RKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            R  S   +    G   +     Y D +Y+GE+ +GTP     + FDTGSS+LW  SS C  +      +KY    SSTY ++G++  I YG G + SG    D V +G L ++ Q  IE  R  +  F     DG+LGLGF
Sbjct:   57 RSVSSSNSTSTDGIGYVPVTDYYNDIEYYGEVTVGTPGVTLKLDFDTGSSDLWFASSLC--TNCGSSQTKYNPNESSTYARDGRTWSISYGDGSSASGILGTDTVILGGLTIRHQT-IELARREASQFQSGPSDGLLGLGF 194          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP2_RHINI (Rhizopuspepsin-2 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 55/180 (30.56%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  125 STPNGGLYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            + P+G    I L K   + N + +A+   ++  +     R  S   +    G   +     Y D +Y+G++ +GTP     + FDTGSS+LW  S+ C  +      +KY   +SSTY K+G++  I YG G + SG    D V +G L +  Q  IE  +  + +F      G+LGLGF
Sbjct:   21 AAPSGKKLSIPLTK---NTNYKPSAKNAIQKALAKYHRFRTTSSSNSTSTEGTGSVPVTDYYNDIEYYGKVTVGTPGVTLKLDFDTGSSDLWFASTLC--TNCGSSQTKYNPNQSSTYAKDGRTWSISYGDGSSASGILGTDTVTLGGLKITKQT-IELAKREATSFQSGPSYGLLGLGF 194          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP_RHIMI (Mucorpepsin OS=Rhizomucor miehei PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 2
Query:  278 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ--EFIEATREPS 613
            G  D     ++   +Y   + IGTP Q+F ++FDTGSS+ WVP   C  S  C     +    SST+K    + +I YGTG  +G + ED + IGD+ V  Q   +++  R P+
Sbjct:   74 GSVDTPGYYDFDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTFKATNYNLNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPT 187          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP_RHIPU (Mucorpepsin OS=Rhizomucor pusillus PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  278 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQ 583
            G  D   L ++   +Y   + IGTP Q+F ++FDTGSS+ WVP   C  S  C     +    SST+K+   + +I YGTG  +G +  D + +G   VK Q
Sbjct:   71 GSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGGANGIYFRDSITVGGATVKQQ 172          
The following BLAST results are available for this feature:
BLAST of FC920186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CARP1_RHINI1.176e-1740.00Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 S... [more]
CARP4_RHINI2.620e-1734.13Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1[more]
CARP_RHICH4.470e-1740.17Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2[more]
ASP6_CAEEL5.838e-1742.86Aspartic protease 6 OS=Caenorhabditis elegans GN=a... [more]
CARP5_RHINI7.624e-1733.89Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2[more]
CARP_SYNRA2.218e-1644.44Syncephapepsin OS=Syncephalastrum racemosum GN=SPS... [more]
CARP3_RHINI8.430e-1636.17Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1[more]
CARP2_RHINI1.590e-1430.56Rhizopuspepsin-2 OS=Rhizopus niveus PE=3 SV=2[more]
CARP_RHIMI1.346e-1335.09Mucorpepsin OS=Rhizomucor miehei PE=1 SV=1[more]
CARP_RHIPU1.139e-1236.27Mucorpepsin OS=Rhizomucor pusillus PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005B02EF RVDevelop1 Citrus clementina cDNA clone C32005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920186 ID=FC920186; Name=FC920186; organism=Citrus clementina; type=EST; length=690bp
GTCTGCTCCAAGCATTTCTCTGTCTCGATCATCGAAAGAGACTTTACTTG
TCAACATGGGAACGGTATTCAAATCTATTACAGCCGGTTTCTTCCTTTGT
TTGCTTCTGTTTCCTGTGGTGTTCTCGACACCAAACGGTGGGTTATACAG
AATCGGACTTAAAAAGAGGAAGTTTGACCTGAACAACAGAGTGGCTGCCC
GCCTTGACTCCAAGGAAGGAGAGTCATTCAGAACTTCTATCAGAAAATAT
TCTCTTCGTGGAAACTTAGGAGAGTCAGGGGATGCTGATATTGTTGCGCT
GAAGAACTACATGGATGCTCAGTACTTTGGTGAGATTGGTATTGGCACAC
CCCCGCAAAATTTCACTGTGATATTTGACACTGGTAGTTCAAATTTGTGG
GTGCCCTCTTCTAAGTGTTATTTCTCGATTGCATGCTATTTCCATTCCAA
GTACAGGTCAGGCCGCTCAAGTACCTACAAGAAGAATGGTAAATCGGCTG
ATATCCATTATGGAACTGGAGCTATTTCTGGTTTTTTTAGCGAAGACCAT
GTCAAAATCGGTGATCTTGTGGTCAAAGATCAGGAATTTATTGAGGCAAC
TAGGGAGCCCAGCCTCACTTTCTTGCTGGCCAAGTTTGATGGCATACTTG
GACTTGGCTTCCAGAGATTTCTGTTTGAAAGCTGTGCCCG
back to top