FC920187

Overview
NameFC920187
Unique NameFC920187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14125 contig Ccv1_Contig14125:40..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 53/186 (28.49%), Postives = 94/186 (50.54%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S+  +   R+L+ G  GFIG+HL ++L+ +++ E+  +D     S D + +++G PRF  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    R   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y  ++G+   + R
Sbjct:  315 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFR 495          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 53/186 (28.49%), Postives = 94/186 (50.54%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S+  +   R+L+ G  GFIG+HL ++L+ +++ E+  +D     S D + +++G PRF  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    R   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y  ++G+   + R
Sbjct:  316 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFR 496          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 2
Query:  164 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGAR-ILLTSTSKVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVADTLM 628
            M ILV GGAG+IGSH+VD+L+E  + EV+VVD+  TG +  +     HP  +  + D+ +   +        +VD + H A  +        P+K    N  G + +L +    G + I+ +ST+  YG P     DE       P    + Y E K + +T+M
Sbjct:    1 MAILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAV-----HPAAKFYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIP-----DEIPIKETTPQRPINPYGESKLMMETIM 154          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPY (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S   +   R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y ++ G++  + R
Sbjct:  309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPS (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis GN=arnA PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S   +   R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y ++ G++  + R
Sbjct:  309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPP (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis (strain Pestoides F) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S   +   R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y ++ G++  + R
Sbjct:  309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPN (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S   +   R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y ++ G++  + R
Sbjct:  309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPG (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S   +   R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y ++ G++  + R
Sbjct:  309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPE (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis GN=arnA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S   +   R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y ++ G++  + R
Sbjct:  309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPB (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S   +   R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y ++ G++  + R
Sbjct:  309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489          
The following BLAST results are available for this feature:
BLAST of FC920187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ARNA_PECCP3.201e-1228.49Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWCT3.201e-1228.49Bifunctional polymyxin resistance protein arnA OS=... [more]
GALE_STRMU1.216e-1130.49UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]
ARNA_YERPY1.216e-1128.49Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPS1.216e-1128.49Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPP1.216e-1128.49Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPN1.216e-1128.49Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPG1.216e-1128.49Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPE1.216e-1128.49Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPB1.216e-1128.49Bifunctional polymyxin resistance protein arnA OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005B03EF RVDevelop1 Citrus clementina cDNA clone C32005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920187 ID=FC920187; Name=FC920187; organism=Citrus clementina; type=EST; length=678bp
GGGAATAAGAAAATCTGGGTTTTTCAGTATTGTGTGTAAGCTTTCAGTGA
TTTAAGAAGTTTGAGGAATGGCTCAGGAAATTTCAAATGGAAATCACAAC
TCTGCTTCTAAACCACCTCCAACTCCGTCCCCTTTGAGATTCTCCAAATT
TTTTCAGTCCAACATGAGGATTCTGGTTACTGGAGGAGCTGGATTTATCG
GCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGAACGAGGTGATT
GTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTAAGGAAATGGAT
TGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGACTGAGCCATTGT
TGATCGAGGTTGATCAAATCTATCACCTTGCTTGTCCTGCCTCCCCAATC
TTCTACAAATACAACCCTGTAAAGACTATAAAGACAAATGTGATTGGTAC
ATTGGACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAGGATTTTGCTTA
CATCAACTTCAAAGGTTTACGGAGATCCTCTTGTGCATCCCCAGGATGAG
AGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGTTGCTATGATGA
GGGAAAAAGAGTTGCAGACACTTTGATGTTTGACTACCATCTGCAGCATG
GGATTGAGATAAGGATTGCTAGGATTTT
back to top