FC920189

Overview
NameFC920189
Unique NameFC920189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15182 contig Ccv1_Contig15182:112..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.507e-46
Identity = 93/214 (43.46%), Postives = 130/214 (60.75%), Query Frame = 2
Query:   32 EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH 673
            E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LH
Sbjct:   12 ELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLH 224          
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.385e-46
Identity = 95/219 (43.38%), Postives = 133/219 (60.73%), Query Frame = 2
Query:   20 TDPR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH 673
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP +KPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LH
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLH 224          
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.001e-44
Identity = 91/206 (44.17%), Postives = 129/206 (62.62%), Query Frame = 2
Query:   47 TFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK 664
            ++AS      I ++ + + S   E    +I DEL+LDGN + NLA+F  T ++ E   L+   I+KN +D DEYP T E+++RCV+++A L+N+P  +    +G  T GSSEA ML G+A K +W++ RK+QGKP+DKPNIVTG  VQ+CW KFA YF             Y+M P +A++  DENTI V   LG T T ++EDVK
Sbjct:   17 SYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSP--ESSETIGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVK 219          
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.660e-43
Identity = 92/213 (43.19%), Postives = 126/213 (59.15%), Query Frame = 2
Query:   23 DPREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDV 661
            D  + L   +        I +FK+ D+    E   ++I DEL+LDGN + NLA+F  T ++     ++   I+KN +D DEYP + E++NRC++++A L+N P  D    +G  T GSSEA ML GLA K  W++ RK+ G PYDKPNIVTG  VQ+CW KFA YF           G YVMN  + ++ VDENTI V   LG T T ++EDV
Sbjct:    7 DKHKSLYDNYVQSATTEEIAKFKLADDPNEPETIKKLIMDELLLDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDV 216          
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.475e-43
Identity = 89/218 (40.83%), Postives = 132/218 (60.55%), Query Frame = 2
Query:   23 DPREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLL 670
            D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y+            +  +N  K ++ VDE TI V  I+G T TG ++D+K L
Sbjct:    9 DEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKAL 224          
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.538e-43
Identity = 89/218 (40.83%), Postives = 132/218 (60.55%), Query Frame = 2
Query:   23 DPREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLL 670
            D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y+            +  +N  K ++ VDE TI V  I+G T TG ++D+K L
Sbjct:    9 DEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKAL 224          
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.614e-40
Identity = 86/209 (41.15%), Postives = 125/209 (59.81%), Query Frame = 2
Query:   50 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLL 670
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   D + +G  TVGSSEA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y+            +  ++  K  +LVDE TI V  ILG T TG+F+D++LL
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KDMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLL 225          
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.133e-40
Identity = 85/209 (40.67%), Postives = 124/209 (59.33%), Query Frame = 2
Query:   50 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLL 670
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   + + +G  TVGSSEA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y+            +  ++  K  ELVDE TI +  ILG T TG+F+D+ LL
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KEMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALL 225          
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.857e-39
Identity = 82/195 (42.05%), Postives = 118/195 (60.51%), Query Frame = 2
Query:   83 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF-XXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK 664
            ++ +P   +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+  ++ KN  D DEYP   EL  RC++M+A L++     D+  +G  T GSSEAIML GLA K++W+ + K  GK   KPNI+  +  QV  EKF RYF             +++++P    + VDENTI    ILG+T TG  E+V+
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWH--ANPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVE 251          
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.849e-37
Identity = 82/214 (38.32%), Postives = 123/214 (57.48%), Query Frame = 2
Query:   38 LNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH 673
            L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T TG ++D+  L+
Sbjct:   12 LEPVFGSSAEDRDIPKYTLAKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALN 223          
The following BLAST results are available for this feature:
BLAST of FC920189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEA_ECO571.507e-4643.46Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEB_ECOL64.385e-4643.38Glutamate decarboxylase beta OS=Escherichia coli O... [more]
GADA_DICDI7.001e-4444.17Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
GADB_DICDI2.660e-4343.19Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCE_LACLM3.475e-4340.83Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA4.538e-4340.83Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISMO1.614e-4041.15Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEC_LISIN6.133e-4040.67Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCE_YEAST8.857e-3942.05Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
DCEB_LISIN2.849e-3738.32Glutamate decarboxylase beta OS=Listeria innocua G... [more]

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Properties
Property NameValue
Genbank descriptionC32005B07EF RVDevelop1 Citrus clementina cDNA clone C32005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920189 ID=FC920189; Name=FC920189; organism=Citrus clementina; type=EST; length=675bp
GGTGATTTCAACAACAGAAACAGACCCCAGGGAGATTTTGAACTCCACAT
TTGCTTCAAGATATGTCCGTGCTGCTATTCCCAGATTCAAGATGCCAGAT
AATTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGCTGAT
GTTAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACTTGGA
TGGAGCCCGAGTGTGATAAGCTTGTCATGGCTTCGATTAATAAAAACTAT
GTTGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGTGTGT
GAATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAGACTG
CAGTGGGCGTGGGGACTGTAGGTTCATCAGAGGCAATAATGCTTGCTGGC
TTGGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCAAACC
CTATGATAAGCCCAATATAGTCACTGGAGCTAATGTGCAGGTATGCTGGG
AGAAATTTGCGAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAACTGGAA
GAGGGATATTATGTGATGAATCCTGTGAAAGCTGTTGAGTTGGTAGATGA
GAACACCATTTGTGTTGCAGCCATTCTGGGATCAACCTTGACGGGAGAAT
TTGAGGATGTTAAGCTTCTTCATGA
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