FC920191

Overview
NameFC920191
Unique NameFC920191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig442 contig Ccv1_Contig442:525..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 53/120 (44.17%), Postives = 72/120 (60.00%), Query Frame = 3
Query:   15 GLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            GLK KK  +ME  + G  V  K D+A     K++    V  + E++D+I VTKGKG +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+
Sbjct:  155 GLK-KKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 47/115 (40.87%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   24 QKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            +K   + +I + G  V +K+++A     K++ I+ VF++ + +D+I VTKGKG++GV+ R+ V R   K+ +G+RKV  IG+  P R+  TV   GQ GYH RTE NK I K+G+
Sbjct:  147 KKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGE 261          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            ++ G+ +K   LME ++ GG +A++ +FA     K + I  VF   E++D+  +TKG G +G V RWG+    RK  R  +K  V  +G W+P R+ + V + GQ GYH RTE NK+I K+G  ++E
Sbjct:  151 EVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE 277          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.606e-20
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 3
Query:   24 QKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            +KK  +ME  + G  V  K ++A     K+I    V  + E++D+I VTKGKG +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+
Sbjct:  157 KKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_STAMF (50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 50/122 (40.98%), Postives = 81/122 (66.39%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFT-VARAGQNGYHHRTEMNKKIYKLG 365
            + G+ +KK  ++EI++ GG++++++D+A       + +D VF++ + IDIIGVTKGKG++GV+ R+GV  LPR  K  +G RK   IG+  P   + +   + GQ G+H RTE NK+I K+G
Sbjct:  210 LSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG 328          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 52/126 (41.27%), Postives = 74/126 (58.73%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            M G+ +K   LMEI+V GG +A++ ++A+G   K+I +  V +     DI  +T GKG +G V RWGVT   RK   G   R V  +G W+P  V + V ++GQ GY  RTE NK+I K+G+   E
Sbjct:  152 MSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKRWGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE 277          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 3
Query:   24 QKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            +KK  +ME  + G  V  K D+A     K++    V  + E++D+I VTKGKG +G V RWG+     K  R    R V  +G WHP RV +TV +AGQ G+HHRTE NK++  +G+
Sbjct:  157 KKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGIKIQFHKAQRAGKGRHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGE 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            + G+ +K   L+EI + G  SV ++++FA     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE NK++ K+G+   E
Sbjct:  153 LSGIGKKTPELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE 278          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 55/127 (43.31%), Postives = 76/127 (59.84%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            + G+ +K   L+EI + G  SV +++ FA     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE NK+I K+G    E
Sbjct:  157 LSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE 282          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            ++ G+ +K   ++EI V G  S+ ++++FA     K +    VF   +++D+I VTKGKGY+GVV R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK+I K+G    E
Sbjct:  152 RLSGIGKKTPEVLEIPVGGVPSIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE 278          
The following BLAST results are available for this feature:
BLAST of FC920191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_PYRKO7.208e-2144.1750S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_NANEQ7.208e-2140.8750S ribosomal protein L3P OS=Nanoarchaeum equitans... [more]
RL3_UNCMA9.414e-2138.5850S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_THEGJ1.606e-2042.7450S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_STAMF2.097e-2040.9850S ribosomal protein L3P OS=Staphylothermus marin... [more]
RL3_METB62.097e-2041.2750S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_THEON2.739e-2041.8850S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_PYRAE2.739e-2042.5250S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_PYRIL3.577e-2043.3150S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_PYRCJ6.102e-2042.1950S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]

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Properties
Property NameValue
Genbank descriptionC32005B10EF RVDevelop1 Citrus clementina cDNA clone C32005B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920191 ID=FC920191; Name=FC920191; organism=Citrus clementina; type=EST; length=723bp
GCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATC
CAGGTCAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTT
CTTCGAGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGA
TTGACATTATTGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACT
CGTTGGGGTGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAA
GGTTGCTTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTG
CTAGAGCTGGGCAGAACGGTTACCATCACCGTACAGAGATGAACAAGAAA
ATTTACAAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGA
ATTTGACAGGTCGGTATATCTGTTATCTTCTTTAATGGGTTCTTTTTCTT
CTTGAGATCTATATTGTTTATTTTAGGTGTATGTGAATTGTTAAGTTGGG
TGAGTTCGAGTAAGGTTGGGTAAGAGCGGGTGGGAACTAGTTGATATTTT
TCCAACCTTTTTTGTTGACCTTTTCTGACCTTTGTTGGCCCCTGCACTTA
AAAAACCGCCAGGTACATGTTTGGCTCCATTTTGTGGCTGAATATTTTTT
TTTATTGTATTATATAGTCATTTCATCATTTAAAGCATGTGGACAGCTGT
CAAGACTTTGCAGTATTCATAGC
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