FC920191

Overview
NameFC920191
Unique NameFC920191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig442 contig Ccv1_Contig442:525..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 48/127 (37.80%), Postives = 77/127 (60.63%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            K   L +KK  ++EI++ G +++  + +A     K++ I+ VF   E ID + +TKGKG++G V RWG+  +  +  ++G+ R    IG W P R+ +TV  AGQ G+H RTE NK+I K+G+   E
Sbjct:  146 KDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE 272          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            + G+ +K   L+EI + G  SV +++ FA     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK++ K+G    E
Sbjct:  153 LSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAE 278          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 3
Query:    3 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSA 392
            RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK+I K+G   +E + A
Sbjct:  166 RKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGDEPKEINPA 295          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 53/128 (41.41%), Postives = 79/128 (61.72%), Query Frame = 3
Query:   18 LKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSA 392
            L +K+  ++EIQ+ GGS+  ++++      KQIP+  VF++ ++ DIIGVTKGKG++GV+ R+ V   PR  K  +G RK   IGA  P+      V + GQ G+H RTE NK+I K+G    E + A
Sbjct:  162 LGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVIKRYSVVEFPRWHKHRKGSRK---IGARGPSISTPSYVPQPGQLGFHRRTEYNKRIIKIGDNVNEINPA 286          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLG 365
            +  + +K+  +ME +V GGS++ +VDFA    +   +  +  VF+  E  D+ G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  LG
Sbjct:  151 LSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            ++ G+ +K   LME+++ GGS+  ++ +A     K+I I    +  E +D+  VT GKG EG V RWGV    RK  RG +K  +  +G WHP  V + V + GQ GY  RTE NK+I K+G    E
Sbjct:  151 ELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE 277          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 3
Query:   24 QKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 377
            +KK  +ME +V GGSV+ ++D A    E   +  ++ +F+  E  D+ GVTKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +G+  +
Sbjct:  157 KKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDE 278          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 3
Query:   18 LKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            L +KK  ++E+QV GG +  ++++      K + +  VF++ ++IDIIGVTKGKG++GVV R+GV  LPR  K  +G RKV   GA  P+      V + GQ GYH RTE NK+I K+     E
Sbjct:  163 LGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNE 283          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_SULIY (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 3
Query:    3 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSA 392
            RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK+I K+G   +E + A
Sbjct:  166 RKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGDDPKEINPA 295          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 3
Query:    3 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSA 392
            RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK+I K+G   +E + A
Sbjct:  166 RKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGDDPKEINPA 295          
The following BLAST results are available for this feature:
BLAST of FC920191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_META37.969e-2037.8050S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_THENV1.041e-1941.7350S ribosomal protein L3P OS=Thermoproteus neutrop... [more]
RL3_SULSO1.041e-1940.9150S ribosomal protein L3P OS=Sulfolobus solfataric... [more]
RL3_SULAC1.359e-1941.4150S ribosomal protein L3P OS=Sulfolobus acidocalda... [more]
RL3_NATPD1.359e-1939.8450S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_METMJ1.775e-1939.3750S ribosomal protein L3P OS=Methanoculleus marisn... [more]
RL3_HALMA1.775e-1940.1650S ribosomal protein L3P OS=Haloarcula marismortu... [more]
RL3_SULTO2.319e-1942.7450S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]
RL3_SULIY2.319e-1940.9150S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIN2.319e-1940.9150S ribosomal protein L3P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionC32005B10EF RVDevelop1 Citrus clementina cDNA clone C32005B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920191 ID=FC920191; Name=FC920191; organism=Citrus clementina; type=EST; length=723bp
GCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATC
CAGGTCAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTT
CTTCGAGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGA
TTGACATTATTGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACT
CGTTGGGGTGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAA
GGTTGCTTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTG
CTAGAGCTGGGCAGAACGGTTACCATCACCGTACAGAGATGAACAAGAAA
ATTTACAAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGA
ATTTGACAGGTCGGTATATCTGTTATCTTCTTTAATGGGTTCTTTTTCTT
CTTGAGATCTATATTGTTTATTTTAGGTGTATGTGAATTGTTAAGTTGGG
TGAGTTCGAGTAAGGTTGGGTAAGAGCGGGTGGGAACTAGTTGATATTTT
TCCAACCTTTTTTGTTGACCTTTTCTGACCTTTGTTGGCCCCTGCACTTA
AAAAACCGCCAGGTACATGTTTGGCTCCATTTTGTGGCTGAATATTTTTT
TTTATTGTATTATATAGTCATTTCATCATTTAAAGCATGTGGACAGCTGT
CAAGACTTTGCAGTATTCATAGC
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