FC920194

Overview
NameFC920194
Unique NameFC920194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14094 contig Ccv1_Contig14094:1..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920194 vs. ExPASy Swiss-Prot
Match: 2NPD_STAA2 (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain JH1) GN=SaurJH1_0937 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 622
            +I  I+ ++V V   ++G  +E ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPNESIIERLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVV---SIPVIAAGGIMDGRGVLASIVLGAEGVQMGT 240          
BLAST of FC920194 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAW (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain MW2) GN=MW0803 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16
Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 622
            +I   + ++V V   ++G  SE ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+ +GT
Sbjct:  117 HIDTTIKKQVPVCCFTFGIPSESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVV---SIPVIAAGGIMDGRGVLASIVLGAEGVQMGT 240          
BLAST of FC920194 vs. ExPASy Swiss-Prot
Match: 2NPD_BACSU (Probable 2-nitropropane dioxygenase OS=Bacillus subtilis GN=yrpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.520e-14
Identity = 64/226 (28.32%), Postives = 98/226 (43.36%), Query Frame = 2
Query:   71 IVQAPLGPDISGPEXXXXXXXXXXXXXXRAPDWEAPDYLRDLIRKTRSLTERPFGVGVV----LAFPHNENIK------------------------------AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH------VIGQD--GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 622
            I+QAP+   I+ P                A  +  PD L   I++   LT+ PF + V     L  P  + IK                               IL  KV     ++    E+ V E  +AG  ++    + +EA      G+D +++QG EAGGH        G+   GL++L+P   D +    +P+IAAGG++D RG  AAL+LGAQG+ +G+
Sbjct:   14 IIQAPMAGGITKPRLASAVSNQGALGSL-ASGYLTPDLLEQQIKEIFELTDAPFQINVFVPLGLEMPPKDQIKKWKENIPLANQVNQFTSVQEEWDDFYQKIDLILKYKVKACSFTFDLPPEDAVKELKTAGCCLIGTASTVEEALLMEERGMDIVVLQGSEAGGHRGAFLPSKGESAVGLMALIPQAADAL---SVPVIAAGGMIDHRGVKAALTLGAQGVQIGS 235          
BLAST of FC920194 vs. ExPASy Swiss-Prot
Match: 2NPD_STAHJ (Probable 2-nitropropane dioxygenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2032 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  272 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH------VIGQD----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 622
            I+ ++  +V V   ++G  S+E++ +   A + ++    + DEA    +AG+D ++ QG EAGGH         Q     G +SL+P +VD +    IP++AAGG++D RG +A+  LGAQG+ +GT
Sbjct:  118 IQTVIKYRVPVCCFTFGIPSKEIIEQLKGAKITLIGTATTVDEAIANEHAGMDIVVAQGSEAGGHRGSFLTTNNQREPLIGTMSLIPQIVDHVS---IPVVAAGGVMDGRGILASQILGAQGVQMGT 241          
BLAST of FC920194 vs. ExPASy Swiss-Prot
Match: 2NPD_STAS1 (Probable 2-nitropropane dioxygenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1854 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 43/127 (33.86%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  272 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 622
            I  ++ + V  +  ++G   + ++ +     +K++    S +EA    +AG+D +I QG EAGGH          +    G +SL+P +VD I   +IP++AAGGI+D RG VA++ LGA+G+ +GT
Sbjct:  118 IDLVIEKGVPAVSFTFGIPEQTVIEKLKERHIKLIGTATSVEEAIANESAGMDMVIAQGSEAGGHRGAFSETASQLTPLIGTMSLVPQMVDQI---NIPVVAAGGIMDGRGLVASMVLGAEGVQMGT 241          
The following BLAST results are available for this feature:
BLAST of FC920194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
2NPD_STAA21.188e-1638.58Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAW1.552e-1638.58Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_BACSU5.520e-1428.32Probable 2-nitropropane dioxygenase OS=Bacillus su... [more]
2NPD_STAHJ2.098e-1334.65Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAS16.103e-1333.86Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionC32005C02EF RVDevelop1 Citrus clementina cDNA clone C32005C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920194 ID=FC920194; Name=FC920194; organism=Citrus clementina; type=EST; length=660bp
GACAGATCATTTGTATACTTTGATCTTTACTCTAATGGGTTGGAGAGGAA
TGCTGGGTTTCGAGTATGGGATTGTTCAGGCACCATTGGGACCTGATATT
TCAGGCCCGGAGCTTGTAGCTGCTGTTGCTAATGCCGGTGGTCTTGGTCT
TCTTAGAGCCCCCGATTGGGAAGCACCAGATTACTTGAGGGATCTGATAA
GGAAGACAAGATCATTAACAGAGCGACCATTTGGGGTTGGTGTGGTTCTA
GCATTTCCCCACAACGAAAATATAAAGGCTATACTTAGTGAAAAAGTAGC
AGTTTTGCAAGTTTCCTGGGGTGAATATTCAGAGGAGCTCGTTCTTGAAG
CTCATAGTGCTGGAGTCAAAGTTGTCCCCCAAGTTGGGAGTTTTGACGAA
GCAAGAAAAGCAGTTAACGCAGGTGTAGATGCAATTATAGTCCAAGGACG
TGAAGCTGGGGGCCATGTAATTGGACAGGATGGTTTGATTTCCTTATTGC
CAATGGTGGTTGATCTTATCGGGGATCGAGATATTCCAATAATTGCTGCA
GGTGGTATTGTGGATGCACGTGGTTATGTTGCAGCCCTGTCTCTTGGTGC
TCAAGGCATCTGCTTAGGCACAGGTTTGTGGCAAGTGAGGAAAGCTATGC
GCATCCTGAG
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