FC920196

Overview
NameFC920196
Unique NameFC920196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.837e-53
Identity = 100/180 (55.56%), Postives = 130/180 (72.22%), Query Frame = 2
Query:  152 VPSRGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            V  RGGFSF+ C+RN  L     G+ +P  RKTGTTI GL+F+DGVILGADTRAT   +V DK+CEKIH++AP IYCCGAG AADTE  T M +S+++LH   TGRE RV T   +L++ LF YQG+V A+L++GGVD  GP L++++PHGS   LPF  +GSG  AA+A+ E + Q  +
Sbjct:    6 VEHRGGFSFENCQRNASLEHVLPGLRVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNM 185          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.904e-52
Identity = 100/180 (55.56%), Postives = 128/180 (71.11%), Query Frame = 2
Query:  152 VPSRGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            V   GGFSF+ C+RN  L     G+ +P  RKTGTTI GL+F+DGVILGADTRAT   +V DK+CEKIH++AP IYCCGAG AADTE  T M +S+++LH   TGRE RV T   +L++ LF YQG+V A+LV+GGVD  GP L+ ++PHGS   LPF  +GSG  AA+A+ E + Q  +
Sbjct:    6 VEPTGGFSFENCQRNASLEHVLPGLRVPHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNM 185          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 100/175 (57.14%), Postives = 125/175 (71.43%), Query Frame = 2
Query:  167 GFSFDLCRRNDML--AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            GFSF+ C RN  L  A  G+ +P  RKTGTTI GL+FQDGVILGADTRAT   +V DK CEKIH++AP IYCCGAG AAD E  T M +S ++LH   TGRE RV T   +L++ LF YQGYV A+L++GGVD TGP L++++PHGS   LPF  +GSG  AA+A+ E + Q  +
Sbjct:   11 GFSFENCERNAALQRALPGLRVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNM 185          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.846e-50
Identity = 94/173 (54.34%), Postives = 127/173 (73.41%), Query Frame = 2
Query:  167 GFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            G SFD  +RN+ LA+     P    TGTTIVG+ F +GV++ ADTR+T+GPIV DKNC K+H ++P I+C GAGTAADTEAVT ++ S ++LH  +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HGSTD   + ++GSGSLAAMA+ E   ++ L
Sbjct:    3 GLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDL 175          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB7_ENCCU (Probable proteasome subunit beta type-7 OS=Encephalitozoon cuniculi GN=PUP1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.524e-33
Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 2
Query:  239 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFE 664
            KTGTTIVG+ ++ GVIL ADTR+T+GP+V DKNC KIH +   I CCGAGTAAD   V  M S +L+L +    R   V     +  +HL  Y G + AAL++GG+D  G HL+ I+PHGS ++  F ++GSGSL A+A  E
Sbjct:    4 KTGTTIVGMKYKTGVILAADTRSTQGPVVSDKNCVKIHQITDKIMCCGAGTAADASRVARMASRELRLFQNKYLRLPLVSHFRKVCTQHLHKYGGGIGAALIVGGIDSEGCHLYEIHPHGSENSALFVSLGSGSLGAIATLE 145          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  239 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            + GTTI  L ++DGVIL AD+R T G  + ++  +K+  +  NI+CC +G+AADT+ V D++   L ++R   G +  V TA TL  +  +  +  + A L++ G D  TG  +++I   GS    P A  GSGS       +   +E +
Sbjct:   22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENM 171          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  245 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            GTTI+G+ +  GV+LGAD+R + G  V ++  +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  A  L +   +N +  +Q  +++GG D   G  ++ I P G+    PFA  GSGS      F+   +EG+
Sbjct:   13 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGM 160          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  239 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGS 640
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS
Sbjct:   16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGS 149          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  239 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGS 640
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS
Sbjct:   16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGS 149          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 51/149 (34.23%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +   I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G     PFA  GSGS       +   +EG+
Sbjct:   33 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGM 181          
The following BLAST results are available for this feature:
BLAST of FC920196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSB10_RAT3.837e-5355.56Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB10_MOUSE1.904e-5255.56Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB10_BOVIN2.487e-5257.14Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB7_YEAST8.846e-5054.34Proteasome component PUP1 OS=Saccharomyces cerevis... [more]
PSB7_ENCCU7.524e-3350.00Probable proteasome subunit beta type-7 OS=Encepha... [more]
PSB6_SCHPO1.799e-1834.00Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB6_TOBAC3.069e-1834.46Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB9_SALSA8.929e-1835.82Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_ONCMY1.166e-1735.82Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB6_BOVIN1.166e-1734.23Proteasome subunit beta type-6 OS=Bos taurus GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionC32005C04EF RVDevelop1 Citrus clementina cDNA clone C32005C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920196 ID=FC920196; Name=FC920196; organism=Citrus clementina; type=EST; length=686bp
CTTGCCGGGGATCCTTTCTTTCGTTTTAAGTTTCTAAGACTCGAAGTCGC
TCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAGTG
GGATCAATCTCAGGTTGAAGAAAGTTTAAAATGTCAAACTCTGCAATAGA
TGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGATA
TGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGACG
ACCATTGTTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGATAC
CAGAGCAACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAATTC
ATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTGAC
ACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGTTA
TCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAAGA
AGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTGGT
GGAGTTGATTGCACTGGACCTCATCTTCACACAATATATCCACATGGTTC
AACTGACACTTTACCATTTGCGAACATGGGTTCTGGTTCTCTTGCTGCCA
TGGCTATGTTTGAAATCAAATANCAAGAAGGCCTGA
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