FC920196

Overview
NameFC920196
Unique NameFC920196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 50/150 (33.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  218 VNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFE 664
            +NL +    GTTI+G+ +  GV+LGAD+R + G  V ++  +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  +  L++   +N +  +Q  L++GG D   G  ++ I   G+    PFA  GSGS      F+
Sbjct:    3 LNLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFD 152          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +  +I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       +   +EG+
Sbjct:   32 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGM 180          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +  +I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       +   +EG+
Sbjct:   32 TGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGM 180          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 9.872e-17
Identity = 50/149 (33.56%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +   I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       +   +EG+
Sbjct:   33 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGM 181          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 48/133 (36.09%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  245 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPHGSTDTLPFANMGSGS 640
            GT+I+ + F+DGVILGAD+R T G  + ++  +K+  +   I+CC +G+AADT+A+ D+V   L+L+    G  S   TA ++ K+  +  +  + A +++ G D      ++TI   GS   LP+A  GSGS
Sbjct:   19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGS 150          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 47/149 (31.54%), Postives = 77/149 (51.68%), Query Frame = 2
Query:  239 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H      + +V +A TL+K   + Y+  + A L++ G D            G     PFA  GSGS       + + + G+
Sbjct:   16 KTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFATLGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGM 164          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  245 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGS 640
            GT+I+ + +  GVI+GAD+R T G  + ++   KI  +   IYCC +G+AADT+A++D V   L++H      E  V TA +L +   ++ +  + A +++ G D   G  ++ I   GS    PFA  GSGS
Sbjct:   14 GTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGS 146          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGS 640
            TGTTI+ + F  GVI+G+D+RA+  G  V  K   K+  +   I+CC AG+ AD +AVT     Q+  H         V  A ++LK+  +N +  +QA  +  G D   GP ++T+   G   + PF   GSGS
Sbjct:   15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGS 149          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGS 640
            TGTTI+ + F  GVI+G+D+RA+  G  V  K   K+  +   I+CC AG+ AD +AVT     Q+  H         V  A ++LK+  +N +  +QA  +  G D   GP ++T+   G   + PF   GSGS
Sbjct:   15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGS 149          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT--GPHLHTIYPHGSTDTLPFANMGSGS 640
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   IYC  +G+AAD +AV DM + QL+LH         V+ A  +++   + Y+  + A L++ G D    G    T+   G     PFA  GSGS
Sbjct:   19 TGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTL--GGMLTRQPFAIGGSGS 151          
The following BLAST results are available for this feature:
BLAST of FC920196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSB6_ARATH1.989e-1733.33Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_RAT7.559e-1733.56Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]
PSB6_MOUSE7.559e-1733.56Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB6_HUMAN9.872e-1733.56Proteasome subunit beta type-6 OS=Homo sapiens GN=... [more]
PSB6_YEAST1.684e-1636.09Proteasome component PRE3 OS=Saccharomyces cerevis... [more]
PSB9_ORYLA3.176e-1531.54Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]
PSB6_DICDI9.240e-1535.34Proteasome subunit beta type-6 OS=Dictyostelium di... [more]
PB6LB_SALSA4.586e-1435.56Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA4.586e-1435.56Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB9_HUMAN1.129e-1234.07Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005C04EF RVDevelop1 Citrus clementina cDNA clone C32005C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920196 ID=FC920196; Name=FC920196; organism=Citrus clementina; type=EST; length=686bp
CTTGCCGGGGATCCTTTCTTTCGTTTTAAGTTTCTAAGACTCGAAGTCGC
TCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAGTG
GGATCAATCTCAGGTTGAAGAAAGTTTAAAATGTCAAACTCTGCAATAGA
TGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGATA
TGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGACG
ACCATTGTTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGATAC
CAGAGCAACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAATTC
ATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTGAC
ACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGTTA
TCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAAGA
AGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTGGT
GGAGTTGATTGCACTGGACCTCATCTTCACACAATATATCCACATGGTTC
AACTGACACTTTACCATTTGCGAACATGGGTTCTGGTTCTCTTGCTGCCA
TGGCTATGTTTGAAATCAAATANCAAGAAGGCCTGA
back to top