FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACAN (Phosphoglycerate kinase OS=Bacillus anthracis GN=pgk PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 108/186 (58.06%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM KEL+ L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACAH (Phosphoglycerate kinase OS=Bacillus thuringiensis (strain Al Hakam) GN=pgk PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 108/186 (58.06%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM KEL+ L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACAC (Phosphoglycerate kinase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=pgk PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 108/186 (58.06%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM KEL+ L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACAA (Phosphoglycerate kinase OS=Bacillus anthracis (strain A0248) GN=pgk PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 108/186 (58.06%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM KEL+ L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PELPB (Phosphoglycerate kinase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.445e-51
Identity = 101/181 (55.80%), Postives = 136/181 (75.14%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            KKS+S   +  ++GKRV +RVD NVPLD N  ITDD R+  ++P+IK ++ +G ++IL SHLGRPKG V   YSL P+  RL+ELL   V MA +CIG E  + V  + +G V+LLEN+RFH EEE NDP+FA++LASL ++YVNDAFG+AHRAHASTEG+  +++ +VAGFL+ +EL YL
Sbjct:    3 KKSLS---DIAIQGKRVLMRVDFNVPLDSNKKITDDKRIIESLPSIKKVLENGGRLILMSHLGRPKGKVNADYSLAPVATRLAELLDCPVTMAKECIGTETMQQVLALQDGEVILLENLRFHPEEEANDPDFARELASLGEVYVNDAFGTAHRAHASTEGITHYVQTAVAGFLIERELLYL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HYDS0 (Phosphoglycerate kinase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=pgk PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.445e-51
Identity = 101/178 (56.74%), Postives = 130/178 (73.03%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++ DLKGKRV VRVD NVP+D+  NI DD R+RAA+PTI+YL+   A VIL SHLGRPKG   KYSLKP+  RLS  +  +V MA DCIG+++E +V       V++LEN+RFHKEEE+ D EF+KKLASL ++YV+DAFG+ HR HAS   V + LKP+  GFL+ KEL Y   A+
Sbjct:    7 IRDIDLKGKRVLVRVDFNVPIDNQGNIEDDARIRAAIPTIEYLLDAKAIVILMSHLGRPKGFDEKYSLKPVAKRLSRYIHKDVVMAPDCIGKDMENIVKNAKSEDVIMLENLRFHKEEEECDEEFSKKLASLGEVYVSDAFGTCHRKHASVYCVPQILKPACMGFLLEKELLYFEKAM 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORRA (Phosphoglycerate kinase OS=Borrelia recurrentis (strain A1) GN=pgk PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.445e-51
Identity = 103/179 (57.54%), Postives = 133/179 (74.30%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            S+  +K+ D  GKR  VR D NVPL +  NITDD R++AA+PTI+YL   GA+V+L SHLGRPKG    +YSL P+  RLSELLG +VKM +DCIG+EV   V+ +  G V+LLENVRF+KEEE+N   FA +L+   D++VNDAFG+AHRAHAST GVA +L P+V GFLM +E ++L
Sbjct:    2 SIRTIKDCDFSGKRALVRCDFNVPLREG-NITDDTRIKAALPTIEYLKSQGARVVLMSHLGRPKGEKNLRYSLMPIARRLSELLGQDVKMLSDCIGDEVVTAVSCMQNGDVVLLENVRFYKEEEENSDAFAMQLSKSGDIFVNDAFGTAHRAHASTSGVASYL-PAVGGFLMEREDEFL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GEOSF (Phosphoglycerate kinase OS=Geobacter sp. (strain FRC-32) GN=pgk PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.723e-51
Identity = 102/176 (57.95%), Postives = 127/176 (72.16%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            DL+ K VF+RVD NVP DDN NIT+D R+  AVPTIKY + +GAKVIL+SHLGRPKG   PKY++ P   RLSELLG EVK A DC G +V+ MVA +  G VL+LENVRF+  EEKNDP+FA KLA+  ++YVNDAF  +HRAHAS   + K +    AGFLM  E+ +   A++
Sbjct:   11 DLREKLVFIRVDFNVPQDDNGNITEDTRIVGAVPTIKYAIENGAKVILASHLGRPKGEKKPKYTMAPAARRLSELLGKEVKQATDCFGPDVDAMVAALQPGDVLMLENVRFYPGEEKNDPDFACKLANGCEIYVNDAFAVSHRAHASVHAITKCIPVIAAGFLMKNEMTFFEKAMT 186          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORT9 (Phosphoglycerate kinase OS=Borrelia turicatae (strain 91E135) GN=pgk PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.723e-51
Identity = 104/179 (58.10%), Postives = 132/179 (73.74%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            S+  +K+ D  GKR  VR D NVPL +  NITDD R+RAA+PTI+YL   GA+VIL SHLGRPKG    KYSL P+  RLSELLG +VKM  DCIG+EV   V+ +  G ++LLEN+RF+KEEE+N   F +KL+   D++VNDAFG+AHRAHAST G+A +L P+V GFLM KE ++L
Sbjct:    2 SIKTIKDCDFAGKRALVRCDFNVPLKEG-NITDDTRIRAALPTIEYLKSQGARVILMSHLGRPKGEKNLKYSLMPVAKRLSELLGQDVKMLPDCIGDEVATTVSCMKNGDIVLLENLRFYKEEEENCDAFVRKLSQNGDIFVNDAFGTAHRAHASTAGLAAYL-PAVGGFLMEKEDEFL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_EXISA (Phosphoglycerate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=pgk PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.270e-50
Identity = 102/180 (56.67%), Postives = 136/180 (75.56%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ D+KGKRVF RVD NVPL D + I D+ R++AA+PTIK+L+  GAK++L+SHLGRPKG   P++SL P+  RL+ELLG +V +  +  G   E+ VA + EG V++LENVRF+  E KNDPE AK  A+LAD+YVNDAFG+AHRAHASTEG+A  +  +VAG LM KEL+ L  A+S
Sbjct:    6 IRDIDVKGKRVFCRVDFNVPLKDGV-IQDETRIQAALPTIKHLLDGGAKLVLASHLGRPKGEKKPEFSLAPVAKRLAELLGKDVPLVEEAYGPVAEEAVANLSEGDVVVLENVRFYPGETKNDPELAKGFAALADVYVNDAFGAAHRAHASTEGIAHHVDTAVAGLLMEKELEVLGKALS 184          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BACAN5.700e-5158.06Phosphoglycerate kinase OS=Bacillus anthracis GN=p... [more]
PGK_BACAH5.700e-5158.06Phosphoglycerate kinase OS=Bacillus thuringiensis ... [more]
PGK_BACAC5.700e-5158.06Phosphoglycerate kinase OS=Bacillus anthracis (str... [more]
PGK_BACAA5.700e-5158.06Phosphoglycerate kinase OS=Bacillus anthracis (str... [more]
PGK_PELPB7.445e-5155.80Phosphoglycerate kinase OS=Pelodictyon phaeoclathr... [more]
PGK_HYDS07.445e-5156.74Phosphoglycerate kinase OS=Hydrogenobaculum sp. (s... [more]
PGK_BORRA7.445e-5157.54Phosphoglycerate kinase OS=Borrelia recurrentis (s... [more]
PGK_GEOSF9.723e-5157.95Phosphoglycerate kinase OS=Geobacter sp. (strain F... [more]
PGK_BORT99.723e-5158.10Phosphoglycerate kinase OS=Borrelia turicatae (str... [more]
PGK_EXISA1.270e-5056.67Phosphoglycerate kinase OS=Exiguobacterium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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