FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORDL (Phosphoglycerate kinase OS=Borrelia duttonii (strain Ly) GN=pgk PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.270e-50
Identity = 103/179 (57.54%), Postives = 132/179 (73.74%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            S+  +K+ D  GKR  VR D NVPL +  NITDD R++AA+PTI+YL   GA+V+L SHLGRPKG    +YSL P+  RLSELLG  VKM +DCIG+EV   V+ +  G V+LLENVRF+KEEE+N   FA +L+   D++VNDAFG+AHRAHAST GVA +L P+V GFLM +E ++L
Sbjct:    2 SIRTIKDCDFSGKRALVRCDFNVPLREG-NITDDTRIKAALPTIEYLKSQGARVVLMSHLGRPKGEKNLRYSLMPIARRLSELLGQNVKMLSDCIGDEVVTAVSCMQNGDVVLLENVRFYKEEEENSDAFAMQLSKSGDIFVNDAFGTAHRAHASTSGVASYL-PAVGGFLMEREDEFL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACSK (Phosphoglycerate kinase OS=Bacillus clausii (strain KSM-K16) GN=pgk PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.270e-50
Identity = 108/180 (60.00%), Postives = 131/180 (72.78%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            L + D  GK VF RVD NVP+ D   ITD+ R++AA+PTIKYL   GA+V+L+SHLGRPKG V     L P+  RLSELLG EV+   +  G   ++ V  + +GGVLLLENVRF+  EEKNDPE AK  ASLAD++VNDAFG+AHRAHASTEG+A +L PS AGFLM KELD L  A+S
Sbjct:    6 LYDYDFAGKTVFCRVDFNVPMKDG-KITDETRIQAALPTIKYLSEQGARVLLASHLGRPKGEVVESLRLAPVATRLSELLGKEVQAVQEAHGPVAKQAVEGLEDGGVLLLENVRFYPGEEKNDPELAKAFASLADIFVNDAFGAAHRAHASTEGIAHYL-PSAAGFLMEKELDVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DESAP (Phosphoglycerate kinase OS=Desulforudis audaxviator (strain MP104C) GN=pgk PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.166e-50
Identity = 99/175 (56.57%), Postives = 131/175 (74.86%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +++ D+ GKRVFVRVD NVP ++   + DD R+RA +PTI+YL+  GA VIL+SHLGRPKG    ++SL+P+  RLS L   +V+ A + +G E E    E+  G +LLLEN+RF+ EEE+NDPEFA +LA+LADLYVNDAFG+AHRAHAST G+A  L P+VAG L+ +ELD L
Sbjct:    6 IRDVDIAGKRVFVRVDFNVPFNERGEVADDTRIRAVLPTIEYLLTGGAAVILASHLGRPKGKRDDRFSLRPVADRLSALTARQVRFAAEAVGPETEAASRELAPGDILLLENIRFYPEEEQNDPEFASRLAALADLYVNDAFGTAHRAHASTAGIAAHL-PAVAGLLLERELDIL 179          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOPE (Phosphoglycerate kinase OS=Clostridium perfringens GN=pgk PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.695e-50
Identity = 101/181 (55.80%), Postives = 137/181 (75.69%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++  +KGK+V VR D NVPL D + ITD+NR+  A+PTIKYL+ +GAKVIL SH+G+PKG   P++SL P+  RLSE+LG EV  A D   +GE  +K VAE+ +G V+LL+N R+ KEE KN  E +K+LASLA+++VNDAFG+AHRAH ST GV ++LKP+V G+L+ KEL +L  AV
Sbjct:    8 IEDVQVKGKKVLVRCDFNVPLKDGV-ITDENRLNGAMPTIKYLVDNGAKVILCSHMGKPKGEAKPEFSLAPVAKRLSEMLGKEVVFAADDNVVGENAKKAVAEMKDGDVVLLQNTRYRKEETKNGEELSKELASLAEMFVNDAFGTAHRAHCSTVGVTEYLKPAVCGYLIQKELKFLGDAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOP1 (Phosphoglycerate kinase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.695e-50
Identity = 101/181 (55.80%), Postives = 137/181 (75.69%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++  +KGK+V VR D NVPL D + ITD+NR+  A+PTIKYL+ +GAKVIL SH+G+PKG   P++SL P+  RLSE+LG EV  A D   +GE  +K VAE+ +G V+LL+N R+ KEE KN  E +K+LASLA+++VNDAFG+AHRAH ST GV ++LKP+V G+L+ KEL +L  AV
Sbjct:    8 IEDVQVKGKKVLVRCDFNVPLKDGV-ITDENRLNGAMPTIKYLVDNGAKVILCSHMGKPKGEAKPEFSLAPVAKRLSEMLGKEVVFAADDNVVGENAKKAVAEMKDGDVVLLQNTRYRKEETKNGEELSKELASLAEMFVNDAFGTAHRAHCSTVGVTEYLKPAVCGYLIQKELKFLGDAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORBU (Phosphoglycerate kinase OS=Borrelia burgdorferi GN=pgk PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.695e-50
Identity = 106/182 (58.24%), Postives = 133/182 (73.08%), Query Frame = 3
Query:  114 SVSVLKE-ADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVG 653
            S+  +K+ +   GKR  VR D NVPL +  +I+DD R+RAA+ TI+YL   GA+++L SHLGRP G   PKYSLKP+  RLSELLG +VKM +DCIG EV     ++ +G V+LLENVRF+ EEEKND  FAKKL+   D++VNDAFG+AHRAHAST GVA +L PSV GFLM KE  +L G
Sbjct:    2 SIKTVKDFSSFAGKRALVRCDFNVPLKEG-SISDDTRIRAALSTIEYLKERGARIVLVSHLGRPDGKKNPKYSLKPVANRLSELLGQDVKMLSDCIGSEVVNSTLQMKDGDVVLLENVRFYAEEEKNDKNFAKKLSENGDVFVNDAFGAAHRAHASTVGVADYL-PSVGGFLMEKEDKFLGG 181          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOPS (Phosphoglycerate kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.075e-49
Identity = 100/181 (55.25%), Postives = 137/181 (75.69%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++  +KGK+V VR D NVPL D + ITD+NR+  A+PTIKYL+ +GA+VIL SH+G+PKG   P++SL P+  RLSE+LG EV  A D   +GE  +K VAE+ +G V+LL+N R+ KEE KN  E +K+LASLA+++VNDAFG+AHRAH ST GV ++LKP+V G+L+ KEL +L  AV
Sbjct:    8 IEDVQVKGKKVLVRCDFNVPLKDGV-ITDENRLNGAMPTIKYLVDNGAQVILCSHMGKPKGEAKPEFSLAPVAKRLSEMLGKEVVFAADDNVVGENAKKAVAEMKDGDVVLLQNTRYRKEETKNGEELSKELASLAEMFVNDAFGTAHRAHCSTVGVTEYLKPAVCGYLIQKELKFLGDAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GEOUR (Phosphoglycerate kinase OS=Geobacter uraniireducens (strain Rf4) GN=pgk PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.404e-49
Identity = 95/171 (55.56%), Postives = 124/171 (72.51%), Query Frame = 3
Query:  135 ADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            +DL+ K++F+RVD NVPLD++ NIT+D R+RA +PTI Y + + AKV+L+SHLGRPKG    KYS+ P   RLS LLG EVK+A DCIG+ V K++  +  G V++LEN+RF+  EEKND +FAK LA   D+YVNDAF  +HRAHAS E + KF     AGFLM  E+ Y
Sbjct:   10 SDLREKKIFMRVDFNVPLDEHQNITEDTRIRAVLPTINYALDYNAKVVLASHLGRPKGERNAKYSMAPAAKRLSRLLGKEVKLAPDCIGDGVSKIIDSMQPGDVVMLENLRFYPGEEKNDDDFAKALADHCDIYVNDAFAVSHRAHASVEAITKFFPIVAAGFLMKNEMSY 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GEOSM (Phosphoglycerate kinase OS=Geobacter sp. (strain M21) GN=pgk PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.834e-49
Identity = 97/175 (55.43%), Postives = 126/175 (72.00%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +L GK++F+RVD NVPLDDN NIT+D R+RA +P+I Y +   AK+IL+SHLGRPKG    KYS+ P   RLS LLG EVK+A+DCIG+EV+ M+  +  G V++LENVRF+  EEKND +FAK LA+  D+YVNDAF  +HRAHAS E +        AGFLM  E++Y   A+
Sbjct:   11 NLSGKKLFMRVDFNVPLDDNQNITEDTRIRAVLPSINYALDQKAKIILASHLGRPKGERKEKYSMAPAAKRLSRLLGKEVKLASDCIGDEVKAMINAMQPGDVIMLENVRFYAGEEKNDADFAKALANDCDVYVNDAFAVSHRAHASVEAITNCFPVVAAGFLMKNEMNYFEKAM 185          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_OCEIH (Phosphoglycerate kinase OS=Oceanobacillus iheyensis GN=pgk PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.128e-49
Identity = 104/179 (58.10%), Postives = 131/179 (73.18%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            + +  ++GKRVF RVD NVPL D   ITDD R+RAA+PTI+ L   GAKVIL+SHLGRPKG V  +  L P+  RLS+LLG EV   +   GEEV++ ++E+  GGVLL+ENVRF   EEKNDPE  +  A++ADLYVNDAFG+AHRAHAST GVA+ L P+ AG LM KE++ L  A+
Sbjct:    6 INDLQVEGKRVFTRVDFNVPLKDG-EITDDTRIRAALPTIEQLTAQGAKVILASHLGRPKGTVVEELRLDPVADRLSDLLGKEVLKTDQVYGEEVDQAISELENGGVLLIENVRFEAGEEKNDPELVEAFANMADLYVNDAFGAAHRAHASTTGVAEKL-PAAAGKLMEKEIEALGNAL 182          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BORDL1.270e-5057.54Phosphoglycerate kinase OS=Borrelia duttonii (stra... [more]
PGK_BACSK1.270e-5060.00Phosphoglycerate kinase OS=Bacillus clausii (strai... [more]
PGK_DESAP2.166e-5056.57Phosphoglycerate kinase OS=Desulforudis audaxviato... [more]
PGK_CLOPE3.695e-5055.80Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_CLOP13.695e-5055.80Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_BORBU3.695e-5058.24Phosphoglycerate kinase OS=Borrelia burgdorferi GN... [more]
PGK_CLOPS1.075e-4955.25Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_GEOUR1.404e-4955.56Phosphoglycerate kinase OS=Geobacter uraniireducen... [more]
PGK_GEOSM1.834e-4955.43Phosphoglycerate kinase OS=Geobacter sp. (strain M... [more]
PGK_OCEIH3.128e-4958.10Phosphoglycerate kinase OS=Oceanobacillus iheyensi... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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