FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORBZ (Phosphoglycerate kinase OS=Borrelia burgdorferi (strain ZS7) GN=pgk PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.128e-49
Identity = 105/182 (57.69%), Postives = 132/182 (72.53%), Query Frame = 3 
Query:  114 SVSVLKE-ADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVG 653
            S+  +K+ +   GKR  VR D NVPL +  +I+DD R+RAA+ TI+YL   GA+++L SHLGRP G    KYSLKP+  RLSELLG +VKM +DCIG EV     ++ +G V+LLENVRF+ EEEKND  FAKKL+   D++VNDAFG+AHRAHAST GVA +L PSV GFLM KE  +L G
Sbjct:    2 SIKTVKDFSSFAGKRALVRCDFNVPLKEG-SISDDTRIRAALSTIEYLKERGARIVLVSHLGRPDGKKNSKYSLKPVANRLSELLGQDVKMLSDCIGSEVVNSTLQMKDGDVVLLENVRFYAEEEKNDKNFAKKLSENGDVFVNDAFGAAHRAHASTVGVADYL-PSVGGFLMEKEDKFLGG 181
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_AKKM8 (Phosphoglycerate kinase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=pgk PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.085e-49
Identity = 101/177 (57.06%), Postives = 129/177 (72.88%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVG 653
            +++ D KGK V +RVD NVPL D   IT+D R+ AA+PTIK+L+  GA+++L+SHLGRPK    P +SLKP+  RLSELLG +VK  +  IG E E   A + +G V+LLENVRF+  E+KNDPEFAK L   A L+VNDAFG+AHRAHASTEGV  F + S  GFL+ +EL+YL G
Sbjct:    6 VRDLDAKGKEVLMRVDFNVPLKDG-EITNDARIVAALPTIKFLLDQGARLVLTSHLGRPKNEPDPAFSLKPVAARLSELLGKDVKFVSAAIGPEAEAARAAMKDGDVVLLENVRFYPGEKKNDPEFAKSLLGNATLFVNDAFGTAHRAHASTEGVTHFAEKSAMGFLIERELEYLEG 181
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_THEAB (Phosphoglycerate kinase OS=Thermosipho africanus (strain TCF52B) GN=pgk PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.335e-49
Identity = 105/180 (58.33%), Postives = 130/180 (72.22%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ DLKGKRV +RVD NVP+ D   ITDD R+  A+PTIKY + +GA VIL SHLGRPKG   P++SL P+  RLSELLG EV    +  GE V + V    EG V+LLEN RF K E KNDPE AKK A LAD++VNDAFG+AHRAHAS  G+A+++ PSVAGFLM KE+ +L  A +
Sbjct:    6 IRDIDLKGKRVIMRVDFNVPMKDG-EITDDTRIVEALPTIKYAIENGAIVILLSHLGRPKGERKPEFSLLPVAKRLSELLGKEVTFIPELYGEIVNEKVKNAKEGDVILLENTRFDKGETKNDPELAKKWAELADIHVNDAFGTAHRAHASNVGIAQYI-PSVAGFLMEKEIKFLSKATT 183
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LEPBP (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=pgk PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.335e-49
Identity = 103/181 (56.91%), Postives = 132/181 (72.93%), Query Frame = 3 
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +L+E +LKGKRVFVRVD NVP++ N   TD  R+   +PT++ L+  GAK+IL SHLGRPKG   PKYS+KP+   LSEL+  +V  +   IG +V KM   + EG +LLLEN+RFHKEEE+N   F K+LA LAD+YVNDAFG+AHRAHASTEGVA  L P+ AG LM KE++ L G ++
Sbjct:    5 LLEEQNLKGKRVFVRVDFNVPVE-NGKATDRTRIEKTLPTLELLISKGAKIILGSHLGRPKGGPEPKYSMKPVFDVLSELVKTKVSFSESVIGSDVVKMTNALGEGEILLLENLRFHKEEEENVASFCKELAKLADVYVNDAFGTAHRAHASTEGVAHLL-PAFAGLLMRKEIEVLSGLLA 183
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LEPBA (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=pgk PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.335e-49
Identity = 103/181 (56.91%), Postives = 132/181 (72.93%), Query Frame = 3 
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +L+E +LKGKRVFVRVD NVP++ N   TD  R+   +PT++ L+  GAK+IL SHLGRPKG   PKYS+KP+   LSEL+  +V  +   IG +V KM   + EG +LLLEN+RFHKEEE+N   F K+LA LAD+YVNDAFG+AHRAHASTEGVA  L P+ AG LM KE++ L G ++
Sbjct:    5 LLEEQNLKGKRVFVRVDFNVPVE-NGKATDRTRIEKTLPTLELLISKGAKIILGSHLGRPKGGPEPKYSMKPVFDVLSELVKTKVSFSESVIGSDVVKMTNALGEGEILLLENLRFHKEEEENVASFCKELAKLADVYVNDAFGTAHRAHASTEGVAHLL-PAFAGLLMRKEIEVLSGLLA 183
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GEOBB (Phosphoglycerate kinase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=pgk PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.968e-49
Identity = 96/175 (54.86%), Postives = 126/175 (72.00%), Query Frame = 3 
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +L GK++F+RVD NVPLDD+ NIT+D R+RA +P+I Y +   AK+IL+SHLGRPKG    KYS+ P   RLS LLG EVK+A+DCIG+EV+ M+  +  G V++LENVRF+  EEKND +FAK LA+  D+YVNDAF  +HRAHAS E +        AGFLM  E++Y   A+
Sbjct:   11 NLSGKKLFMRVDFNVPLDDHQNITEDTRIRAVLPSINYALDQKAKIILASHLGRPKGERKEKYSMAPAAKRLSRLLGKEVKLASDCIGDEVKAMINAMQPGDVIMLENVRFYAGEEKNDADFAKALANDCDVYVNDAFAVSHRAHASVEAITNCFPVVAAGFLMKNEMNYFEKAM 185
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAMLR (Phosphoglycerate kinase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=pgk PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.100e-49
Identity = 93/179 (51.96%), Postives = 129/179 (72.07%), Query Frame = 3 
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPS--VAGFLMXKELDY 644
            S+  +K+ DL  K+VF+R D NVP D+ LNITDD R+R+A+PTI+Y + +G  VIL+SHLGRPK +  KYSL+P+  RL+ L+  +V MA D IGE+ +K  +E+    +LLLEN+RF K E KND   AK+LAS+AD+Y+NDAFG  HRAHAS E + K+   +   AGFL+ KE+++
Sbjct:    3 SILSIKDIDLAKKKVFIRCDFNVPQDEFLNITDDRRIRSAIPTIRYCLDNGCAVILASHLGRPKEIASKYSLEPVAKRLARLMAKDVIMAKDVIGEDAKKKASELKSSEILLLENLRFEKGETKNDENLAKELASMADVYINDAFGVCHRAHASVEAITKYFDNTHKGAGFLLQKEIEF 181
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORGA (Phosphoglycerate kinase OS=Borrelia garinii GN=pgk PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.100e-49
Identity = 102/180 (56.67%), Postives = 133/180 (73.89%), Query Frame = 3 
Query:  114 SVSVLKEAD-LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            S+  +K+ +   GKR  VR D NVPL +  NI+DD R++AA+PTI+YL   GA+++L SHLGRP+G    KYSLKP+  +LSELLG +VKM +DCIG E+     ++ +G V+LLENVRF+ EEEKND  FAKKL+   D++VNDAFG+AHRAHAST GV+ +L PSV GFLM KE  +L
Sbjct:    2 SIKTVKDFNSFAGKRALVRCDFNVPLKEG-NISDDTRIKAALPTIEYLKEKGARIVLISHLGRPEGKKNLKYSLKPVANKLSELLGQDVKMLSDCIGREIVNNTLQMKDGDVVLLENVRFYAEEEKNDKNFAKKLSENGDVFVNDAFGAAHRAHASTVGVSDYL-PSVGGFLMEKEDKFL 179
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOBB (Phosphoglycerate kinase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=pgk PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.189e-48
Identity = 100/181 (55.25%), Postives = 134/181 (74.03%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMA--NDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++  +KGK+V VR D NVPL D + ITD+NR+  A+PTIKYL+ +GAKVIL SH+G+PKG   P+ SL P+  RLSELLG E+K A  N  +GE  +  VAE+ +G V+LLEN R+ KEE KN  EF+K+LASLA+++VNDAFG+AHRAH ST GV  ++  +V G+L+ KEL +L  AV
Sbjct:    8 IEDIQVKGKKVLVRCDFNVPLKDGV-ITDENRLNGALPTIKYLVENGAKVILCSHMGKPKGEPKPELSLAPVAKRLSELLGKEIKFAPDNTVVGENAKAAVAEMKDGDVVLLENTRYRKEETKNGEEFSKELASLAEIFVNDAFGTAHRAHCSTVGVTDYIDTAVCGYLIQKELKFLGNAV 187
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOBA (Phosphoglycerate kinase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=pgk PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.189e-48
Identity = 100/181 (55.25%), Postives = 134/181 (74.03%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMA--NDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++  +KGK+V VR D NVPL D + ITD+NR+  A+PTIKYL+ +GAKVIL SH+G+PKG   P+ SL P+  RLSELLG E+K A  N  +GE  +  VAE+ +G V+LLEN R+ KEE KN  EF+K+LASLA+++VNDAFG+AHRAH ST GV  ++  +V G+L+ KEL +L  AV
Sbjct:    8 IEDIQVKGKKVLVRCDFNVPLKDGV-ITDENRLNGALPTIKYLVENGAKVILCSHMGKPKGEPKPELSLAPVAKRLSELLGKEIKFAPDNTVVGENAKAAVAEMKDGDVVLLENTRYRKEETKNGEEFSKELASLAEIFVNDAFGTAHRAHCSTVGVTDYIDTAVCGYLIQKELKFLGNAV 187
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BORBZ3.128e-4957.69Phosphoglycerate kinase OS=Borrelia burgdorferi (s... [more]
PGK_AKKM84.085e-4957.06Phosphoglycerate kinase OS=Akkermansia muciniphila... [more]
PGK_THEAB5.335e-4958.33Phosphoglycerate kinase OS=Thermosipho africanus (... [more]
PGK_LEPBP5.335e-4956.91Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]
PGK_LEPBA5.335e-4956.91Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]
PGK_GEOBB6.968e-4954.86Phosphoglycerate kinase OS=Geobacter bemidjiensis ... [more]
PGK_CAMLR9.100e-4951.96Phosphoglycerate kinase OS=Campylobacter lari (str... [more]
PGK_BORGA9.100e-4956.67Phosphoglycerate kinase OS=Borrelia garinii GN=pgk... [more]
PGK_CLOBB1.189e-4855.25Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOBA1.189e-4855.25Phosphoglycerate kinase OS=Clostridium botulinum (... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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