FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_TETPY (Phosphoglycerate kinase (Fragment) OS=Tetrahymena pyriformis GN=PGK PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 87/181 (48.07%), Postives = 115/181 (63.54%), Query Frame = 3
Query:  168 VDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-----------KNDP----EFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            VD NVPL D   + D  R++ ++P+IK ++    K ++L SHLGRP G    K+S+KP+VP+L +LLG +VK  NDC+G++VE+ V     G ++LLEN+RFH EEE           K DP    EF K L SL DLYVNDAFG+AHRAH+S  GV    K   AG+L+ KELDY   A+
Sbjct:    1 VDFNVPLKDG-QVKDPTRIQGSIPSIKKILEQNPKGLVLMSHLGRPDGNRVEKHSMKPVVPKLEQLLGTKVKFLNDCVGKDVEEAVKSSRNGEIILLENLRFHAEEEGKSIDAAGNKVKADPKAVKEFRKSLTSLGDLYVNDAFGTAHRAHSSMVGVDH--KIRAAGYLLKKELDYFSKAL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STRSY (Phosphoglycerate kinase OS=Streptococcus suis (strain 05ZYH33) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 89/186 (47.85%), Postives = 122/186 (65.59%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVK-MANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLAD-LYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +K+ +LKGK+V VRVD NVPL D + IT+DNR+ AA+PTIKY++  G + IL SHLGR K    K   SL P+   L+  LG +V  +A    G E+E  +  + +G VLL+EN RF     K+E KND E  K  ASL D ++VNDAFG+AHR+HAS  G++  ++ +VAGFL+  E+ Y+  AV
Sbjct:    6 VKDVELKGKKVLVRVDFNVPLKDGV-ITNDNRITAALPTIKYILEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVAFIAGATRGAELEAAINALEDGQVLLVENTRFEDVDGKKESKNDEELGKYWASLGDGIFVNDAFGTAHRSHASNVGISANVEKAVAGFLLENEIAYIQEAV 190          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STRS2 (Phosphoglycerate kinase OS=Streptococcus suis (strain 98HAH33) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 89/186 (47.85%), Postives = 122/186 (65.59%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVK-MANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLAD-LYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +K+ +LKGK+V VRVD NVPL D + IT+DNR+ AA+PTIKY++  G + IL SHLGR K    K   SL P+   L+  LG +V  +A    G E+E  +  + +G VLL+EN RF     K+E KND E  K  ASL D ++VNDAFG+AHR+HAS  G++  ++ +VAGFL+  E+ Y+  AV
Sbjct:    6 VKDVELKGKKVLVRVDFNVPLKDGV-ITNDNRITAALPTIKYILEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVAFIAGATRGAELEAAINALEDGQVLLVENTRFEDVDGKKESKNDEELGKYWASLGDGIFVNDAFGTAHRSHASNVGISANVEKAVAGFLLENEIAYIQEAV 190          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PHOLU (Phosphoglycerate kinase OS=Photorhabdus luminescens GN=pgk PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 86/180 (47.78%), Postives = 118/180 (65.56%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRP--KGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRV +R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SLKP+V  L E L   V++  + +         E+ EG +++LENVRF+K E+K+D   AKK ASL D+YV DAFG+AHRA AST GVAKF   + AG L+  EL+ L
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKDG-KVTSDARIRASLPTIEAALKQGAKVMITSHLGRPIEGEYNEEFSLKPVVDYLKEKLSSSVRLEKEYLEG------VEVSEGELVVLENVRFNKGEKKDDESLAKKYASLCDIYVMDAFGTAHRAQASTHGVAKFAPVACAGPLLFGELEAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_FRAAA (Phosphoglycerate kinase OS=Frankia alni (strain ACN14a) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 94/186 (50.54%), Postives = 115/186 (61.83%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLD---DNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGE----EVEKMVAEIPEGGVLLLENVRFHKEEEKND----PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + +  + G RV VR DLNVPLD   D   ITDD RVRA+VPTI  L+  GA+VI++SHLGRPKG   P+YSL+P+  RL ELLG  V  A D  G+       ++VA + +G V LLEN+RF   E   D      FA  LA+LA+ YV DAFG+ HRAHAS   V K L P  AG L+  ELD L
Sbjct:    4 IDDLQVAGHRVLVRSDLNVPLDRSGDTPRITDDGRVRASVPTIAALLDRGARVIVTSHLGRPKGEPDPRYSLEPVAARLGELLGRPVAFAGDGTGDIAGAHAREVVAGLGDGEVALLENLRFSPGETSKDAVTRASFADALAALAEFYVGDAFGAVHRAHASVADVPKRL-PHAAGRLVLTELDVL 188          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STRAW (Phosphoglycerate kinase OS=Streptomyces avermitilis GN=pgk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 89/184 (48.37%), Postives = 115/184 (62.50%), Query Frame = 3
Query:  111 KSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHK-EEEKNDPE---FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            K++  L    + GKRVFVR DLNVPL D L ITDD R+RA +PT+K L   GAKV+++SHLGRPKG   P +SL P   RL ELLG  V  A D +G      V  +  G V ++EN+RF+  E  K+D E   FA +LA+LAD+YV D FG+ HR HAS   +   L P  AG+L+  E++ L
Sbjct:    2 KTIDELLAEGVDGKRVFVRADLNVPLADGL-ITDDGRIRAVLPTVKALAEAGAKVVVASHLGRPKGAPDPAFSLLPAAERLGELLGAPVAFAQDTVGPAAHDAVNGLQPGQVAVIENLRFNAGETSKDDAERGAFADRLAALADIYVGDGFGAVHRKHASVYDLPARL-PHYAGYLIATEVNVL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LACF3 (Phosphoglycerate kinase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 85/190 (44.74%), Postives = 120/190 (63.16%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT--PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH--------KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLK-PSVAGFLMXKELDYLVGAVS 662
            +++ DL GK+V +RVD NVP+ D + + DDNR+ AA+PTIKY++ H  K IL SHLGR K     P  S++P+  RLS LL + V       G ++E  +A++ +G VL+++N R+         K E  NDPE  K  ASL DL++NDAFG+AHR HAS  G+A  +   + AGFLM KE+ +L  AV+
Sbjct:    6 VEDLDLAGKKVLMRVDFNVPIKDGV-VGDDNRIVAALPTIKYVLDHQGKAILFSHLGRIKKEDDKPGLSMRPVAERLSNLLNMPVTFVPVTEGPQLEDAIAKMEDGQVLVVQNTRYEDVKDGEYVKRESGNDPELGKYWASLGDLFINDAFGTAHRKHASNVGIASNMPGKAAAGFLMEKEIKFLGDAVT 194          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HAEI8 (Phosphoglycerate kinase OS=Haemophilus influenzae (strain 86-028NP) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 85/180 (47.22%), Postives = 118/180 (65.56%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA +PT+K  +  GAKV+++SHLGRP     TP+ SL+P+V  L    G  V++  D +         ++ +G +++LENVR +K E+KNDPE  KK A+L D++V DAFG+AHRA AST GVA+F   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRATIPTLKLALEKGAKVMVTSHLGRPTEGEFTPEDSLQPVVDYLKNA-GFNVRLEQDYLNG------VDVKDGEIVVLENVRINKGEKKNDPELGKKYAALCDVFVMDAFGTAHRAQASTYGVAEFAPIACAGPLLAAELDAL 173          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BARQU (Phosphoglycerate kinase OS=Bartonella quintana GN=pgk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 84/175 (48.00%), Postives = 109/175 (62.29%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L + D+ GKRV VRVD NVP+     + D+ R++    T+  L   GAK+IL SH GRPKG   P++SL+P+V  L +++   V  A DC+G   +  +  +  GG+LLLENVRFH  EEKND  FA+ LA   DLYVNDAF  +HRAHAS EG+   L PS AG  +  EL  L
Sbjct:    6 LDDVDVTGKRVLVRVDFNVPMSQG-KVCDETRLKRHKETLLELQKRGAKLILLSHCGRPKGQGEPEFSLRPVVRVLEKIINQPVAFAPDCVGVAAQTAIEALQNGGLLLLENVRFHPGEEKNDCSFAEALAHNGDLYVNDAFSVSHRAHASVEGITHLL-PSYAGRSLQCELQAL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACIBY (Phosphoglycerate kinase OS=Acinetobacter baumannii (strain AYE) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 91/177 (51.41%), Postives = 119/177 (67.23%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + +L GKRV +R DLNVP+ + + IT D R+RAA+PTIK  +  GA V++ SHLGRP    PK   SL P+   L+E LG EVK+  D + G EVE        G V+LLENVRF+  E+KN+PE A+K A+L D++V DAFG+AHRA ASTEGVA+F   + AG L+  ELD L
Sbjct:    6 MTDLNLAGKRVLIREDLNVPVKNGV-ITSDARLRAALPTIKAALEKGAAVMVFSHLGRPVEGEPKPEQSLAPVAAYLTEALGQEVKLFTDYLDGVEVEA-------GQVVLLENVRFNPGEKKNNPELAQKYAALCDVFVMDAFGTAHRAEASTEGVARFAPVAAAGPLLAAELDAL 174          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_TETPY3.037e-3648.07Phosphoglycerate kinase (Fragment) OS=Tetrahymena ... [more]
PGK_STRSY3.037e-3647.85Phosphoglycerate kinase OS=Streptococcus suis (str... [more]
PGK_STRS23.037e-3647.85Phosphoglycerate kinase OS=Streptococcus suis (str... [more]
PGK_PHOLU3.037e-3647.78Phosphoglycerate kinase OS=Photorhabdus luminescen... [more]
PGK_FRAAA3.037e-3650.54Phosphoglycerate kinase OS=Frankia alni (strain AC... [more]
PGK_STRAW3.966e-3648.37Phosphoglycerate kinase OS=Streptomyces avermitili... [more]
PGK_LACF33.966e-3644.74Phosphoglycerate kinase OS=Lactobacillus fermentum... [more]
PGK_HAEI83.966e-3647.22Phosphoglycerate kinase OS=Haemophilus influenzae ... [more]
PGK_BARQU3.966e-3648.00Phosphoglycerate kinase OS=Bartonella quintana GN=... [more]
PGK_ACIBY3.966e-3651.41Phosphoglycerate kinase OS=Acinetobacter baumannii... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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