FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACIBS (Phosphoglycerate kinase OS=Acinetobacter baumannii (strain SDF) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 91/177 (51.41%), Postives = 119/177 (67.23%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + +L GKRV +R DLNVP+ + + IT D R+RAA+PTIK  +  GA V++ SHLGRP    PK   SL P+   L+E LG EVK+  D + G EVE        G V+LLENVRF+  E+KN+PE A+K A+L D++V DAFG+AHRA ASTEGVA+F   + AG L+  ELD L
Sbjct:    6 MTDLNLAGKRVLIREDLNVPVKNGV-ITSDARLRAALPTIKAALEKGAAVMVFSHLGRPVEGEPKPEQSLAPVAAYLTEALGQEVKLFTDYLDGVEVEA-------GQVVLLENVRFNPGEKKNNPELAQKYAALCDVFVMDAFGTAHRAEASTEGVARFAPVAAAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACIBC (Phosphoglycerate kinase OS=Acinetobacter baumannii (strain ACICU) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 88/176 (50.00%), Postives = 117/176 (66.48%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + +L GKRV +R DLNVP+ + + IT D R+RAA+PTIK  +  GA V++ SHLGRP    PK   SL P+   L+E LG EVK+  D +         E+  G V+LLENVRF+  E+KN+PE A+K A+L D++V DAFG+AHRA ASTEGVA+F   + AG L+  ELD L
Sbjct:    6 MTDLNLAGKRVLIREDLNVPVKNGV-ITSDARLRAALPTIKAALEKGAAVMVFSHLGRPVEGEPKPEQSLAPVAAYLTEALGQEVKLFTDYLNG------VEVEAGQVVLLENVRFNPGEKKNNPELAQKYAALCDVFVMDAFGTAHRAEASTEGVARFAPVAAAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACIB5 (Phosphoglycerate kinase OS=Acinetobacter baumannii (strain AB0057) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 91/177 (51.41%), Postives = 119/177 (67.23%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + +L GKRV +R DLNVP+ + + IT D R+RAA+PTIK  +  GA V++ SHLGRP    PK   SL P+   L+E LG EVK+  D + G EVE        G V+LLENVRF+  E+KN+PE A+K A+L D++V DAFG+AHRA ASTEGVA+F   + AG L+  ELD L
Sbjct:    6 MTDLNLAGKRVLIREDLNVPVKNGV-ITSDARLRAALPTIKAALEKGAAVMVFSHLGRPVEGEPKPEQSLAPVAAYLTEALGQEVKLFTDYLDGVEVEA-------GQVVLLENVRFNPGEKKNNPELAQKYAALCDVFVMDAFGTAHRAEASTEGVARFAPVAAAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACIB3 (Phosphoglycerate kinase OS=Acinetobacter baumannii (strain AB307-0294) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 91/177 (51.41%), Postives = 119/177 (67.23%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + +L GKRV +R DLNVP+ + + IT D R+RAA+PTIK  +  GA V++ SHLGRP    PK   SL P+   L+E LG EVK+  D + G EVE        G V+LLENVRF+  E+KN+PE A+K A+L D++V DAFG+AHRA ASTEGVA+F   + AG L+  ELD L
Sbjct:    6 MTDLNLAGKRVLIREDLNVPVKNGV-ITSDARLRAALPTIKAALEKGAAVMVFSHLGRPVEGEPKPEQSLAPVAAYLTEALGQEVKLFTDYLDGVEVEA-------GQVVLLENVRFNPGEKKNNPELAQKYAALCDVFVMDAFGTAHRAEASTEGVARFAPVAAAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LEUCK (Phosphoglycerate kinase OS=Leuconostoc citreum (strain KM20) GN=pgk PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.179e-36
Identity = 92/197 (46.70%), Postives = 121/197 (61.42%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH--------KEEEKNDPEFAKKLASLAD-LYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            AK +VS L   +L GK+V +RVD NVP+   + I +DNR+ AA+PTIKY++ +  + IL SHLGR K    K   SL P+  RL ELLG  VK      GEE+E  +  + +G VL++EN RF         K E KN+PE  K  A L D L++NDAFG+AHRAHAS  G+A  +    AGFLM KE+ +L  AV+
Sbjct:    2 AKLTVSDL---ELSGKKVLMRVDFNVPIKAGV-IGNDNRIVAALPTIKYVLENNGRAILFSHLGRIKSEDDKKELSLAPVAARLGELLGKNVKFVPHTRGEELESAINALQDGEVLMVENTRFEDVVDGVEVKNESKNNPELGKYWAGLGDDLFINDAFGTAHRAHASNVGIASNVSQVAAGFLMEKEIKFLGDAVA 194          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_FRASC (Phosphoglycerate kinase OS=Frankia sp. (strain CcI3) GN=pgk PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.179e-36
Identity = 93/186 (50.00%), Postives = 116/186 (62.37%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLD---DNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMA----NDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKND----PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + +  + G RV VR DLNVPLD   D   ITDD RVRA+VPTI  L+  GA+V++SSHLGRPKG   PKYSL+P+  RL+ELLG  V  A     D  G    ++VA + +G V LLEN+RF   E   D      FA +L++LA+ YV DAFG+ HRAHAS   V K L P  AG L+  EL+ L
Sbjct:    4 IDDLQVAGHRVLVRSDLNVPLDRSGDTPRITDDGRVRASVPTISALLDRGARVVVSSHLGRPKGEPDPKYSLEPVAGRLAELLGRPVAFAGDGSGDIAGAHAREVVAGLGDGEVALLENLRFAAGETSKDAAIRAAFADELSALAEFYVGDAFGAVHRAHASVADVPKRL-PHAAGRLVLTELEVL 188          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PHOLL (Phosphoglycerate kinase OS=Photorhabdus luminescens subsp. laumondii GN=pgk PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.765e-36
Identity = 84/180 (46.67%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKR+ +R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP     + ++SLKP+V  L E L   V++  + +         ++ EG +++LENVRF+K E+K+D   AKK ASL D+YV DAFG+AHRA AST GVAKF   + AG L+  EL+ L
Sbjct:    2 SVIKMTDLDLAGKRILIRADLNVPVKDG-KVTSDARIRASLPTIEAALKQGAKVMITSHLGRPTEGEYSEEFSLKPVVDYLEEKLSSPVRLEKEYLEG------VDVAEGELVVLENVRFNKGEKKDDETLAKKYASLCDIYVMDAFGTAHRAQASTHGVAKFAPVACAGPLLSAELEAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PASMU (Phosphoglycerate kinase OS=Pasteurella multocida GN=pgk PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.765e-36
Identity = 84/180 (46.67%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA +PT+K  +  GAKV+++SHLGRP         SLKP+V  L+  L V V++  D +         ++ +G +++LENVR +K E+KNDPE  KK A+L D++V DAFG+AHRA AST GVA++   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLSGKRVFIRADLNVPVKDG-KVTSDARIRATIPTLKLALEKGAKVMVTSHLGRPTEGEFDEANSLKPVVDYLNANLDVPVRLVRDYLDG------VDVNQGEIVVLENVRINKGEKKNDPELGKKYAALCDVFVMDAFGTAHRAQASTYGVAEYAPVACAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ALHEH (Phosphoglycerate kinase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.765e-36
Identity = 84/180 (46.67%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +V  + + DLKGKRV +R DLNVPL +   + DD R+RA++PTI++ +  GA+V+L SHLGRPK     P  SL+P+   L+ LLG EV +A D +         E+ EG  +L ENVRF+  E+ ND   AK++A+L D+YV DAFG+AHRA AST GV ++   + AG L+  EL+ L
Sbjct:    2 AVIKMTDLDLKGKRVLIREDLNVPLKEG-KVADDTRIRASLPTIRHALESGARVMLLSHLGRPKEGEPDPAASLRPVAEHLATLLGQEVPLAEDWLDG------VEVAEGQAVLCENVRFNVGEKANDEALAKRMAALCDVYVMDAFGTAHRAQASTHGVGQYAPVACAGPLLAAELEAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_THISH (Phosphoglycerate kinase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=pgk PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.835e-36
Identity = 86/180 (47.78%), Postives = 121/180 (67.22%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK-GV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRV +R DLNVP+ D   +T D R+RA++PTI++ M  GAKV+L SHLGRP+ GV + + SLKP+   LS LLG EV++  D +         ++ +G V+LLENVRF+K E+KN+   ++K A+L D+YV DAFG+AHRA AST G  ++   + AG L+  EL+ L
Sbjct:    2 SVIKMTDLDLAGKRVLIREDLNVPVKDG-KVTSDARIRASLPTIEHAMKAGAKVMLMSHLGRPEEGVFSEEDSLKPVAEHLSGLLGKEVRLVRDYLDG------VDVADGEVVLLENVRFNKGEKKNEEGLSRKYAALCDVYVMDAFGTAHRAQASTHGAGQYAPVACAGPLLAAELEAL 174          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_ACIBS3.966e-3651.41Phosphoglycerate kinase OS=Acinetobacter baumannii... [more]
PGK_ACIBC3.966e-3650.00Phosphoglycerate kinase OS=Acinetobacter baumannii... [more]
PGK_ACIB53.966e-3651.41Phosphoglycerate kinase OS=Acinetobacter baumannii... [more]
PGK_ACIB33.966e-3651.41Phosphoglycerate kinase OS=Acinetobacter baumannii... [more]
PGK_LEUCK5.179e-3646.70Phosphoglycerate kinase OS=Leuconostoc citreum (st... [more]
PGK_FRASC5.179e-3650.00Phosphoglycerate kinase OS=Frankia sp. (strain CcI... [more]
PGK_PHOLL6.765e-3646.67Phosphoglycerate kinase OS=Photorhabdus luminescen... [more]
PGK_PASMU6.765e-3646.67Phosphoglycerate kinase OS=Pasteurella multocida G... [more]
PGK_ALHEH6.765e-3646.67Phosphoglycerate kinase OS=Alkalilimnicola ehrlich... [more]
PGK_THISH8.835e-3647.78Phosphoglycerate kinase OS=Thioalkalivibrio sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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