FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HAHCH (Phosphoglycerate kinase OS=Hahella chejuensis (strain KCTC 2396) GN=pgk PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 85/180 (47.22%), Postives = 120/180 (66.67%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL+GKRV +R DLNVP+  N  +T D R++AA+PTIK  M  GAKV++ SHLGRP+    + + S++P+   LS LLG +V +  D +  + E     + EGG++L ENVRF+  E K++ E +KK A+L D++V DAFG+AHRA AST GVAKF   + AG L+  EL+ L
Sbjct:    2 SVIKMTDLDLRGKRVLIREDLNVPVK-NGKVTSDARIQAALPTIKLAMEQGAKVMVMSHLGRPEEGQFSEENSMQPVGAHLSSLLGHDVPVVRDYLDGDFE-----VEEGGLVLFENVRFNVGEGKDNEELSKKYAALCDIFVMDAFGTAHRAQASTHGVAKFAPVACAGPLLAAELEAL 175          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HAEIN (Phosphoglycerate kinase OS=Haemophilus influenzae GN=pgk PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 84/180 (46.67%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA +PT+K  +  GAKV+++SHLGRP      P+ SL+P+V  L    G  V++  D +         ++ +G +++LENVR +K E+KNDPE  KK A+L D++V DAFG+AHRA AST GVA+F   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRATIPTLKLALEKGAKVMVTSHLGRPTEGEFKPEDSLQPVVDYLKNA-GFNVRLEQDYLNG------VDVKDGEIVVLENVRVNKGEKKNDPELGKKYAALCDVFVMDAFGTAHRAQASTYGVAEFAPIACAGPLLAAELDAL 173          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HAEIG (Phosphoglycerate kinase OS=Haemophilus influenzae (strain PittGG) GN=pgk PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 84/180 (46.67%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA +PT+K  +  GAKV+++SHLGRP      P+ SL+P+V  L    G  V++  D +         ++ +G +++LENVR +K E+KNDPE  KK A+L D++V DAFG+AHRA AST GVA+F   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRATIPTLKLALEKGAKVMVTSHLGRPTEGEFKPEDSLQPVVDYLKNA-GFNVRLEQDYLNG------VDVKDGEIVVLENVRVNKGEKKNDPELGKKYAALCDVFVMDAFGTAHRAQASTYGVAEFAPIACAGPLLAAELDAL 173          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HAEIE (Phosphoglycerate kinase OS=Haemophilus influenzae (strain PittEE) GN=pgk PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 84/180 (46.67%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA +PT+K  +  GAKV+++SHLGRP      P+ SL+P+V  L    G  V++  D +         ++ +G +++LENVR +K E+KNDPE  KK A+L D++V DAFG+AHRA AST GVA+F   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRATIPTLKLALEKGAKVMVTSHLGRPTEGEFKPEDSLQPVVDYLKNA-GFNVRLEQDYLNG------VDVKDGEIVVLENVRVNKGEKKNDPELGKKYAALCDVFVMDAFGTAHRAQASTYGVAEFAPIACAGPLLAAELDAL 173          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HAES2 (Phosphoglycerate kinase OS=Haemophilus somnus (strain 2336) GN=pgk PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 84/180 (46.67%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ +   +T D R++A +PT+K  +  GAKV+++SHLGRP      P+ SL+P+V  L    G  V++A D +         E+ EG +++LENVR +K E+KNDPE +KK A+L D++V DAFG+AHRA AST GVA+F   + AG L+  EL+ L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKEG-KVTSDARIKATIPTLKLALEKGAKVMVTSHLGRPTEGEFKPEDSLQPVVDYLKGA-GFNVRLAQDYLNG------VEVNEGEIVVLENVRVNKGEKKNDPELSKKYAALCDVFVMDAFGTAHRAQASTYGVAEFAPVACAGPLLAAELEAL 173          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BART1 (Phosphoglycerate kinase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=pgk PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 86/175 (49.14%), Postives = 109/175 (62.29%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L + D+ GKRV VRVD NVP+     + D+ R+     T+  L   GAK+IL SH GRPKG + P++SL+P+V  L +++   V  A DCIG  V+  V  +  G VLLLENVRF+  EEKND  FA  LA   DLYVNDAF  +HRAHAS EG+ + L PS AG  +  EL  L
Sbjct:    6 LDDVDVLGKRVLVRVDFNVPMALG-KVCDETRLVRHKETLVELQKRGAKLILLSHCGRPKGKIEPEFSLRPVVSVLEKIINQPVAFAPDCIGSTVQVAVEALQNGDVLLLENVRFYAGEEKNDCSFAGALAHNGDLYVNDAFSVSHRAHASVEGITRLL-PSYAGRSLQGELQAL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACTPJ (Phosphoglycerate kinase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=pgk PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 86/181 (47.51%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRP-KGVTPKY-SLKPLVPRLSEL-LGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKR+F+R DLNVP+ D   +T D R+RA +PT+K  +  GAKV+++SHLGRP +GV  +  SL+P+V  L+   LGV V++  D +         E+ E  +++LENVR +K E+KNDPE AKK A+L D++V DAFG+AHRA  ST GVA++   + AG L+  ELD L
Sbjct:    2 SVIKMADLDLAGKRLFIRADLNVPVKDG-KVTSDARIRATIPTLKLALQKGAKVMVTSHLGRPTEGVFEEANSLQPVVDYLNASDLGVPVRLVRDYLDG------VEVAENEIVVLENVRINKGEKKNDPELAKKYAALCDVFVMDAFGTAHRAEGSTYGVAEYAPVACAGPLLAAELDAL 175          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACTP7 (Phosphoglycerate kinase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=pgk PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 86/181 (47.51%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRP-KGVTPKY-SLKPLVPRLSEL-LGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKR+F+R DLNVP+ D   +T D R+RA +PT+K  +  GAKV+++SHLGRP +GV  +  SL+P+V  L+   LGV V++  D +         E+ E  +++LENVR +K E+KNDPE AKK A+L D++V DAFG+AHRA  ST GVA++   + AG L+  ELD L
Sbjct:    2 SVIKMADLDLAGKRLFIRADLNVPVKDG-KVTSDARIRATIPTLKLALQKGAKVMVTSHLGRPTEGVFEEANSLQPVVDYLNASDLGVPVRLVRDYLDG------VEVAENEIVVLENVRINKGEKKNDPELAKKYAALCDVFVMDAFGTAHRAEGSTYGVAEYAPVACAGPLLAAELDAL 175          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACTP2 (Phosphoglycerate kinase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=pgk PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 86/181 (47.51%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRP-KGVTPKY-SLKPLVPRLSEL-LGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKR+F+R DLNVP+ D   +T D R+RA +PT+K  +  GAKV+++SHLGRP +GV  +  SL+P+V  L+   LGV V++  D +         E+ E  +++LENVR +K E+KNDPE AKK A+L D++V DAFG+AHRA  ST GVA++   + AG L+  ELD L
Sbjct:    2 SVIKMADLDLAGKRLFIRADLNVPVKDG-KVTSDARIRATIPTLKLALQKGAKVMVTSHLGRPTEGVFEEANSLQPVVDYLNASDLGVPVRLVRDYLDG------VEVAENEIVVLENVRINKGEKKNDPELAKKYAALCDVFVMDAFGTAHRAEGSTYGVAEYAPVACAGPLLAAELDAL 175          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGKC_RALEH (Phosphoglycerate kinase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbKC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 83/178 (46.63%), Postives = 116/178 (65.17%), Query Frame = 3
Query:  120 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK--GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            ++L    L GKRVF+R DLNVP D    ITDD R+RA+VP I   +  GA V+++SHLGRP+     P++SL P+  RLSELLG +V + +       +     +P G V+LLEN R +  E+KN  E A+K+A+L D+YVNDAFG+AHRA A+T G+A++   + AG L+  E+D L
Sbjct:   23 ALLAAGGLAGKRVFIRADLNVPQDAAGAITDDTRIRASVPAIAACLQAGAAVMVTSHLGRPQEGAPDPRHSLAPVGRRLSELLGRQVPLLSGWTEGGFQ-----VPPGQVVLLENCRMNTGEKKNSDELAQKMAALCDVYVNDAFGTAHRAEATTHGIARYAPIACAGPLLAAEIDAL 195          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_HAHCH1.968e-3547.22Phosphoglycerate kinase OS=Hahella chejuensis (str... [more]
PGK_HAEIN2.571e-3546.67Phosphoglycerate kinase OS=Haemophilus influenzae ... [more]
PGK_HAEIG2.571e-3546.67Phosphoglycerate kinase OS=Haemophilus influenzae ... [more]
PGK_HAEIE2.571e-3546.67Phosphoglycerate kinase OS=Haemophilus influenzae ... [more]
PGK_HAES23.357e-3546.67Phosphoglycerate kinase OS=Haemophilus somnus (str... [more]
PGK_BART13.357e-3549.14Phosphoglycerate kinase OS=Bartonella tribocorum (... [more]
PGK_ACTPJ3.357e-3547.51Phosphoglycerate kinase OS=Actinobacillus pleuropn... [more]
PGK_ACTP73.357e-3547.51Phosphoglycerate kinase OS=Actinobacillus pleuropn... [more]
PGK_ACTP23.357e-3547.51Phosphoglycerate kinase OS=Actinobacillus pleuropn... [more]
PGKC_RALEH3.357e-3546.63Phosphoglycerate kinase, chromosomal OS=Ralstonia ... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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