FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ENT38 (Phosphoglycerate kinase OS=Enterobacter sp. (strain 638) GN=pgk PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.385e-35
Identity = 82/180 (45.56%), Postives = 118/180 (65.56%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++  D +         E+ EG +++LENVRF+K E+K+D   +KK A+L D++V DAFG+AHRA AST G+ KF   + AG L+ +ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VEVAEGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAEELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DESDA (Phosphoglycerate kinase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=pgk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 88/177 (49.72%), Postives = 115/177 (64.97%), Query Frame = 3
Query:  117 VSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELD 641
            V+ +++ DL GK V +R DLNVP+ D + IT+D R+RAA+PTI+  +  GA VI+ SHLGRP       ++SL P+  RL++LLG  V +A     +E     A+   G V LLENVRF   E+KNDPE A KLA L D+YV DAFGSAHRAHASTEG  +    + AG L+  EL+
Sbjct:    3 VTKMQDLDLGGKTVVIREDLNVPMKDGI-ITNDKRIRAALPTIQLALEKGAGVIVLSHLGRPTEGQYDQQFSLAPVADRLAQLLGQPVTLAKSL--DE-----AKTAPGQVTLLENVRFLPGEKKNDPELAAKLAGLGDVYVMDAFGSAHRAHASTEGAVRTAAVACAGPLLQAELE 171          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHRVO (Phosphoglycerate kinase OS=Chromobacterium violaceum GN=pgk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 85/176 (48.30%), Postives = 114/176 (64.77%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L E +L GKR  +RVD+NVPL + + I DD R+RA++PTI++ +  GA V+L +HLGRP    PK   SL P+V RLSELLG  V++  D           E+  G V +LENVR +K E+KN+ E  +  A+L D++V+DAFG+AHRA AST  VAKF   + AG L+  ELD L
Sbjct:    6 LSEQNLSGKRALIRVDMNVPLKNGV-IGDDTRIRASLPTIEHCLKAGAAVLLMTHLGRPTEGEPKPEDSLAPVVARLSELLGKPVRLIADFHAG------VELAPGEVAMLENVRLNKGEKKNNDELGRAYAALCDVFVHDAFGTAHRAEASTHAVAKFAPVACAGLLLSAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACIBT (Phosphoglycerate kinase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=pgk PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 90/177 (50.85%), Postives = 118/177 (66.67%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + +L GKRV +R DLNVP+ + + IT D R+RAA+PTIK  +  GA V++ SHLGRP    PK   SL  +   L+E LG EVK+  D + G EVE        G V+LLENVRF+  E+KN+PE A+K A+L D++V DAFG+AHRA ASTEGVA+F   + AG L+  ELD L
Sbjct:    6 MTDLNLAGKRVLIREDLNVPVKNGV-ITSDARLRAALPTIKAALEKGAAVMVFSHLGRPVEGEPKPEQSLALVAAYLTEALGQEVKLFTDYLDGVEVEA-------GQVVLLENVRFNPGEKKNNPELAQKYAALCDVFVMDAFGTAHRAEASTEGVARFAPVAAAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_VIBHB (Phosphoglycerate kinase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=pgk PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 83/180 (46.11%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+ A++PTIK+ +  GAKV+++SHLGRP       ++SL+P+V  L++ L  EVK+A D +         E+  G +++LENVRF+K E+KN+ E +K+ ASL D++V DAFG+AHRA AST GV      + AG L+  EL+ L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIIASLPTIKHCLEAGAKVMVTSHLGRPTEGEYAEEFSLQPVVNYLNDALDCEVKLAKDYLNG------LELNAGELVVLENVRFNKGEKKNEEELSKQYASLCDIFVMDAFGTAHRAQASTHGVGMHADVACAGPLLANELEAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CORA7 (Phosphoglycerate kinase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 92/189 (48.68%), Postives = 115/189 (60.85%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDP----EFAKKLASLA---DLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            A K++  L    + G+ V VR D NVPLDD  NITD  R+ A++PTIK L+  GAKVILS+HLGRPKG V PKYSL P+   LSE L   V +A D  GE+  +    + +G VLLLENVRF   E   D      FA +L +LA     +V+D FG  HRA AS   VAK L P+ AG L+ KE++ L
Sbjct:    2 AFKTLDDLLAEGVSGRHVLVRSDFNVPLDDEGNITDSGRITASLPTIKALIEGGAKVILSAHLGRPKGEVNPKYSLAPVAEALSEALDQYVALAGDVSGEDAHERANGLNDGDVLLLENVRFDPRETSKDEAERGTFADELVALAADNGAFVSDGFGVVHRAQASVYDVAKRL-PAYAGKLVQKEVETL 189          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_VIBPA (Phosphoglycerate kinase OS=Vibrio parahaemolyticus GN=pgk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 83/180 (46.11%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+ A++PTIK+ +  GAKV+++SHLGRP       ++SL+P+V  L++ L  EVK+A D +         E+  G +++LENVRF+K E+KN+ E +KK A+L D++V DAFG+AHRA AST GV      + AG L+  EL+ L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIIASLPTIKHCLEAGAKVMVTSHLGRPTEGEYAEEFSLQPVVNYLNDALDCEVKLAKDYLDG------LELNAGELVVLENVRFNKGEKKNEEELSKKYAALCDVFVMDAFGTAHRAQASTHGVGMHAPVACAGPLLANELEAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SACEN (Phosphoglycerate kinase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 88/187 (47.06%), Postives = 121/187 (64.71%), Query Frame = 3
Query:  111 KSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH-KEEEKNDPE---FAKKLASLAD---LYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            K++  L    ++G+RV VR DLNVPLD +  ITDD RVRA++PTI+ L G GA+V++++HLGRPKG   PK+SL P+  RL ELLG +V +A D +GE  +  VA   +G V+LLENVRF  +E  K+D E    A +LA+L      +V+D FG  HR  AS   +AK + P  AG L+  E++ L
Sbjct:    2 KNLDDLLSEGVRGRRVLVRADLNVPLDGD-RITDDGRVRASLPTIEKLTGAGARVVVTAHLGRPKGEPDPKFSLAPVAARLGELLGADVALAGDVVGESAKSAVAAQADGSVVLLENVRFDARETSKDDAERGALADELAALVGDGAAFVSDGFGVVHRKQASVYDIAKRV-PGYAGGLVLSEVEVL 186          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ROSDO (Phosphoglycerate kinase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 85/184 (46.20%), Postives = 117/184 (63.59%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            S   L + D+ GKRV +RVD+NVP+++   +TD  R+   +PT++ ++  G   I+ +H GRPKG V P+ SL+  +P L   LG +V      I E   + ++++PEG V+LLEN RF   EE NDPE A+ LA+L D++ NDAF +AHRAHAST GVA  L PS AG LM  EL  L  A+S
Sbjct:    2 SWKTLDDMDVAGKRVLLRVDINVPVEEG-QVTDRTRIDRIIPTLQDILAKGGTPIMLAHFGRPKGKVVPEMSLRVTLPALEAALGRKVTF----IEEPNAERLSDLPEGIVVLLENTRFAVGEEANDPEMARFLATLGDVFCNDAFSAAHRAHASTTGVAHLL-PSCAGRLMQAELSALEAALS 179          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PSEF5 (Phosphoglycerate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 86/181 (47.51%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  117 VSVLK--EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            ++VLK  + DL+GKRV +R DLNVP+ D + +T D R+ A++PTIK  +  GA V++ SHLGRP     + + SLKP+   LS  LG EV +  D +G        E+  G ++L ENVRF+K E+KN  E A++ A+L D++V DAFG+AHRA  ST GVAKF K + AG L+  ELD L
Sbjct:    1 MTVLKMTDLDLQGKRVLIREDLNVPVKDGV-VTSDARILASLPTIKLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVADYLSRALGREVPLVADYLGG------VEVKAGDIVLFENVRFNKGEKKNADELAQQYAALCDVFVMDAFGTAHRAEGSTHGVAKFAKVAAAGPLLAAELDAL 174          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_ENT384.385e-3545.56Phosphoglycerate kinase OS=Enterobacter sp. (strai... [more]
PGK_DESDA5.727e-3549.72Phosphoglycerate kinase OS=Desulfovibrio desulfuri... [more]
PGK_CHRVO5.727e-3548.30Phosphoglycerate kinase OS=Chromobacterium violace... [more]
PGK_ACIBT5.727e-3550.85Phosphoglycerate kinase OS=Acinetobacter baumannii... [more]
PGK_VIBHB7.479e-3546.11Phosphoglycerate kinase OS=Vibrio harveyi (strain ... [more]
PGK_CORA77.479e-3548.68Phosphoglycerate kinase OS=Corynebacterium aurimuc... [more]
PGK_VIBPA9.768e-3546.11Phosphoglycerate kinase OS=Vibrio parahaemolyticus... [more]
PGK_SACEN9.768e-3547.06Phosphoglycerate kinase OS=Saccharopolyspora eryth... [more]
PGK_ROSDO9.768e-3546.20Phosphoglycerate kinase OS=Roseobacter denitrifica... [more]
PGK_PSEF59.768e-3547.51Phosphoglycerate kinase OS=Pseudomonas fluorescens... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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