FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_MARMS (Phosphoglycerate kinase OS=Marinomonas sp. (strain MWYL1) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 85/182 (46.70%), Postives = 120/182 (65.93%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +K+ DL  KRV +R DLNVP+ D   +T D R+RAA+PTIK  +  GAKV++ SHLGRP       +YSL+P+   ++ LLG +V +  D + G EVE        G ++L+ENVRF+  E+K+D   +KK+A+L D++V DAFG+AHRA AST GVAKF   + AG L+  EL+ L  A++
Sbjct:    6 MKDVDLANKRVLIREDLNVPVKDG-KVTSDARIRAALPTIKMALEAGAKVMVMSHLGRPTEGQYEEEYSLQPVATHIAGLLGQDVPLVKDWLDGVEVES-------GQLVLVENVRFNLGEKKDDEALSKKMAALCDVFVMDAFGTAHRAQASTHGVAKFAPIACAGPLLSAELEALEKALA 179          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LACRJ (Phosphoglycerate kinase OS=Lactobacillus reuteri (strain JCM 1112) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 84/189 (44.44%), Postives = 117/189 (61.90%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT--PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH--------KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLK-PSVAGFLMXKELDYLVGAV 659
            +++  L+GK+V +RVD NVP+ D + + DDNR+ AA+PTIKY++ HG + IL SHLGR K     P  SL+P+  RLS LL   V       G+++E  +  +  G VLL++N R+         K E  NDPE  K  ASL D++VNDAFG+AHR HAS  G+A  +   + AG+LM KE+ +L  AV
Sbjct:    6 VEDLPLEGKKVLMRVDFNVPIKDGV-VGDDNRIVAALPTIKYVIDHGGRAILFSHLGRIKKEEDKPGLSLRPVAERLSNLLNKPVTFVPVTEGKQLEDAIDNMKNGDVLLVQNTRYEDVKDGEYVKRESGNDPELGKYWASLGDVFVNDAFGTAHRKHASNVGIATNMPGKAAAGYLMEKEIKFLGDAV 193          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_JANSC (Phosphoglycerate kinase OS=Jannaschia sp. (strain CCS1) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 85/181 (46.96%), Postives = 110/181 (60.77%), Query Frame = 3
Query:  120 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            + L + DL GK V  RVD+NVP+D +  +TD  R+   VPTIK ++  G + ++ +H GRPKG   P+ SL+  VP L + LG  V      I       +  +PEG + L+EN RF   EE NDP+ A  LASL D+Y NDAF +AHRAHASTEGVA+ L PS AG LM  EL  L  A+
Sbjct:    4 NTLDDMDLAGKLVLTRVDINVPVDGD-TVTDATRITRIVPTIKDILAKGGRPVMLAHFGRPKGAYVPEMSLRVTVPALEQALGQPVNF----IERPDRATLDALPEGTITLIENTRFSAMEEANDPKMAGFLASLGDVYCNDAFSAAHRAHASTEGVARLL-PSCAGRLMEAELSALEAAL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DESVM (Phosphoglycerate kinase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 87/185 (47.03%), Postives = 116/185 (62.70%), Query Frame = 3
Query:  117 VSVLK--EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            ++VLK  + DLKGKRV +R DLNVPL D   +T D R+RAA+P+I+  +  GA+V+L SHLGRP      P +SL P+   LS  LG +V +  D I         E+ EG  +L ENVRF K E+K+D    +KLA+L D++V DAFG+AHRA AST    +F K + AG L+  ELD L  A+
Sbjct:    1 MAVLKMTDLDLKGKRVLLREDLNVPLKDG-KVTSDKRIRAALPSIEMALKAGARVLLVSHLGRPTEGEFDPAFSLAPVAEHLSRALGFQVPLVRDYIDG------IEVAEGQCVLCENVRFLKGEKKDDEALGRKLAALCDIFVMDAFGAAHRAQASTHAAVRFAKVACAGPLLAAELDALSRAL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACIAD (Phosphoglycerate kinase OS=Acinetobacter sp. (strain ADP1) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 87/176 (49.43%), Postives = 114/176 (64.77%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + DL  KRV +R DLNVP+  N  IT D R+RAA+PTI+  +  GA V++ SHLGRP    PK   SL P+   LS+ LG EVK+  D +         EI  G V+LLENVRF+  E+KN+ E A+K A+L D++V DAFG+AHRA ASTEG A++ K + AG L+  ELD L
Sbjct:    6 MTDLDLSEKRVLIREDLNVPVK-NGQITSDARLRAALPTIQAALAQGAAVMVCSHLGRPVEGEPKPEQSLAPVAAYLSDALGQEVKLLTDYLEG------VEIAPGQVVLLENVRFNLGEKKNNAELAQKYAALCDVFVMDAFGTAHRAEASTEGAARYAKVAAAGPLLATELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PSEPF (Phosphoglycerate kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.276e-34
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +V  + + DL+GKRV +R DLNVP+ D + +T D R+ A++PTIK  +  GA V++ SHLGRP     + + SLKP+   LS+ LG EV +  D +G        ++  G ++L ENVRF+K E+KN  E A++ A+L D++V DAFG+AHRA  ST GVAKF K + AG L+  ELD L
Sbjct:    2 TVLKMSDLDLQGKRVLIREDLNVPVKDGV-VTSDARILASLPTIKLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVADYLSKALGREVPLVADYLGG------VDVKAGDIVLFENVRFNKGEKKNADELAQQYAALCDVFVMDAFGTAHRAEGSTHGVAKFAKVAAAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PSEE4 (Phosphoglycerate kinase OS=Pseudomonas entomophila (strain L48) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.276e-34
Identity = 87/181 (48.07%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  117 VSVLK--EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            ++VLK  + DL+GKRV +R DLNVP+ D + +T D R+ AA+PTIK  +  GA V++ SHLGRP     + + SLKP+   LS+ LG EV +  D +         E+  G ++L ENVRF+K E+KN  E A+K A+L D++V DAFG+AHRA  ST GVAKF K + AG L+  ELD L
Sbjct:    1 MTVLKMTDLDLQGKRVLIREDLNVPVKDGV-VTSDARILAALPTIKLALEKGAAVMVCSHLGRPTEGEFSEENSLKPVAAYLSKALGREVPLVADYLDG------VEVKAGDLVLFENVRFNKGEKKNADELAQKYAALCDVFVMDAFGTAHRAEGSTHGVAKFAKVATAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ORITI (Phosphoglycerate kinase OS=Orientia tsutsugamushi (strain Ikeda) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.276e-34
Identity = 81/180 (45.00%), Postives = 113/180 (62.78%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            L +  +K K V +R+DLN+P +    ITD+ R+   +PTIKYL+ HGAKV++ SHLG PKG +    SL+ +V  L  LL ++V+   + IG   +  + ++  G VLLLEN+RF+  EE ND  F  +L+SL D+YVNDAF  +HR HAS  G+   L PS AGFL+  EL +L    S
Sbjct:    7 LSDVIVKDKVVLLRLDLNIPQEGG-KITDNTRIVRTIPTIKYLILHGAKVVIISHLGNPKGRIELTLSLRSVVTELEALLNIKVQFCPESIGSTPKNAIIKMKAGEVLLLENLRFNSGEELNDATFVNELSSLGDIYVNDAFSCSHRKHASICGLPAKL-PSAAGFLLLSELKHLTSIFS 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_MARAV (Phosphoglycerate kinase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.276e-34
Identity = 87/185 (47.03%), Postives = 121/185 (65.41%), Query Frame = 3
Query:   99 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK-GVTPKYS-LKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            MA KK    + + +L GKRV +R DLNVP+ D   ++ D R+RA++PTIK     GAKV+L SHLGRP+ GV  + S +KP+   L  LLG EV++  D +         E+ +G V+L ENVRF+K E+K++ E A++ A+L D+YV DAFG+AHRA AST GVA+F   + AG L+  EL+ L
Sbjct:    1 MAIKK----MTDLNLAGKRVLIREDLNVPVKDG-KVSSDARIRASLPTIKAAKDAGAKVMLMSHLGRPEEGVYDEASSMKPVAEHLGTLLGQEVRLIKDYLDG------VEVADGEVVLFENVRFNKGEKKDNEELARQYAALCDIYVMDAFGTAHRAQASTHGVARFAPEACAGPLLAAELEAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLAM3 (Phosphoglycerate kinase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.276e-34
Identity = 85/176 (48.30%), Postives = 113/176 (64.20%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP--KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPE----FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            DL+G+RV VR DLNVPL D + I DD R+RA++ T+  L   GA+V++ SHLGRP G TP  KYSL+P+  RL ELLG +V  A+D +G+     V  + +G V++LEN+RFH EE   D      FA+ LA L D++V+D FG  HR  AS   +A  L PS AG L+  EL+ L
Sbjct:   11 DLRGRRVIVRCDLNVPLKDGV-IGDDGRIRASLGTLTGLREAGARVVVISHLGRPDG-TPDDKYSLRPVAARLGELLGADVAFASDTVGDSARAAVEALGDGDVVVLENLRFHAEETSKDETVRRGFAESLAELGDVFVSDGFGVVHRKQASVFELASAL-PSAAGSLIASELEVL 183          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_MARMS9.768e-3546.70Phosphoglycerate kinase OS=Marinomonas sp. (strain... [more]
PGK_LACRJ9.768e-3544.44Phosphoglycerate kinase OS=Lactobacillus reuteri (... [more]
PGK_JANSC9.768e-3546.96Phosphoglycerate kinase OS=Jannaschia sp. (strain ... [more]
PGK_DESVM9.768e-3547.03Phosphoglycerate kinase OS=Desulfovibrio vulgaris ... [more]
PGK_ACIAD9.768e-3549.43Phosphoglycerate kinase OS=Acinetobacter sp. (stra... [more]
PGK_PSEPF1.276e-3446.11Phosphoglycerate kinase OS=Pseudomonas fluorescens... [more]
PGK_PSEE41.276e-3448.07Phosphoglycerate kinase OS=Pseudomonas entomophila... [more]
PGK_ORITI1.276e-3445.00Phosphoglycerate kinase OS=Orientia tsutsugamushi ... [more]
PGK_MARAV1.276e-3447.03Phosphoglycerate kinase OS=Marinobacter aquaeolei ... [more]
PGK_CLAM31.276e-3448.30Phosphoglycerate kinase OS=Clavibacter michiganens... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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